DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and glra2

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_004912302.1 Gene:glra2 / 100494348 XenbaseID:XB-GENE-958032 Length:488 Species:Xenopus tropicalis


Alignment Length:494 Identity:166/494 - (33%)
Similarity:253/494 - (51%) Gaps:69/494 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CMKHYAKGEFQQSLAITDILPEDIKR---YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYV 75
            |.:|..:......::.:|.|.:.:.|   ||....|..:|.|..|..::.:....||.|.:|.|.
 Frog    27 CKEHDTRSGKSPPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYR 91

  Fly    76 ADVFFAQTWKDHRL---RLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWL 137
            .::|..|||.|.||   ..|::...    |:...|.::|:||.||.|.|...|..:|..|..:.:
 Frog    92 VNIFLRQTWNDPRLSYSEYPDDSLD----LDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRI 152

  Fly   138 YKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELP 202
            :|:..:||.::|||.|||.|:...:|.|.|.|.:|:||..:|.:||||:|..|:|:.|.:.:.||
 Frog   153 FKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCAMQLESFGYTMNDLIFEWLSTSPVQVADGLTLP 217

  Fly   203 QVAL-IRNETADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAP 266
            |..| ..||...||:.|:||.|||:||.|.|:|::.||:...|||:.:|||:|||||||..:|||
 Frog   218 QFILKEENELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAP 282

  Fly   267 ARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPK 331
            |||.||:|::||::||.:.|::|||.|||:||:|.:|:||.:|||.||:||..:|.|        
 Frog   283 ARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFV-------- 339

  Fly   332 PMAYPPKPVAGDGPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTT 396
                         .::..|..    ......|:|:..:.:.:|.:|.:.::....:.:.....|.
 Frog   340 -------------SRQHKEFL----RLRRRQKRQSKTVLVGNESVESVRRMNGLRSTDSSAYGTL 387

  Fly   397 RRVVRPPLDADGPWIPRQESR-------------------IILTPTIAPPPPPPQPAAPEPELPK 442
            .::..|.|..:.   ..:|||                   :..||   |.||||||  .:.:..|
 Frog   388 NQIYNPSLREED---VARESRFNFSGYGMGHCLQVKDGTAVKATP---PIPPPPQP--KDADSIK 444

  Fly   443 PKLTPAQERLKRAIYIDRSSRVLFPALFASLNGIYWCVF 481
            .|..   :|.||   ||..||..||..|...|..||..:
 Frog   445 KKFV---DRAKR---IDTISRAAFPLAFLIFNIFYWITY 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 164/475 (35%)
Neur_chan_LBD 38..235 CDD:280998 76/203 (37%)
Neur_chan_memb 243..>334 CDD:280999 48/90 (53%)
glra2XP_004912302.1 LIC 44..477 CDD:273305 164/475 (35%)
Neur_chan_LBD 46..252 CDD:280998 78/209 (37%)
Neur_chan_memb 259..474 CDD:280999 81/253 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.930

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