DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and LOC100330554

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_002662272.3 Gene:LOC100330554 / 100330554 -ID:- Length:475 Species:Danio rerio


Alignment Length:482 Identity:139/482 - (28%)
Similarity:214/482 - (44%) Gaps:102/482 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 QQSLAITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHR 88
            :|.|.|.|        :|....|...|.|..|...|.|..||:|.|..|.:...::....|||.|
Zfish    71 EQLLRIDD--------HDFTMRPAFGGPPIPVGVDVQVESLDTISEVDMDFTMTLYLRHYWKDER 127

  Fly    89 LRLP----ENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKL 149
            |..|    ::||.:.||     :|.:|.||.||.::|.......|..|..:.:|.|..:||.:::
Zfish   128 LSFPSTNNQSMTFDSRL-----VKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVYPDGNVLYSLRV 187

  Fly   150 TLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDP-TTPLVVDENIELPQVALIRNETAD 213
            |:...|.|:.:.:|.|||.|.|::||.::|.|||:..|.. ...|..|:.|.|.|..:.:..|..
Zfish   188 TVTAMCNMDLSRFPLDTQTCSLEIESYAYTDDDLMLYWKKGNESLNTDDRISLSQFFIQKFHTTT 252

  Fly   214 CTQVY-STGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLL 277
            ....| |||.:..|.:.|||:|.:.:::..||.|..::|::|||||||...|.||||.||:|::|
Zfish   253 KLAFYSSTGWYNRLYIHFTLRRHVFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVL 317

  Fly   278 TLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVL-----------SDTPIPK 331
            |:||......:|:|.|||:||||.::.|..||||::::||..:|.:.           :..|...
Zfish   318 TMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVIEYAAVNYLTTVQERRERKLRNQLPCTC 382

  Fly   332 PMAYPPKPV------AGDGPKKEGE-GAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKN 389
            .:|.|.:.:      :...|...|. |.|..|..   .::....|.|:|.:            :|
Zfish   383 GIANPDEDMMMTTCYSDVDPNTTGTYGLPENGGR---QERILAQLSLSDSQ------------RN 432

  Fly   390 RRIVTTTRRVVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKR 454
            .|:.||...|        ..||....                                       
Zfish   433 SRVKTTRGYV--------NIWIDTHA--------------------------------------- 450

  Fly   455 AIYIDRSSRVLFPALFASLNGIYWCVF 481
               ||:.|||:|||.::..|.:||.::
Zfish   451 ---IDKYSRVIFPAAYSLFNIVYWSIY 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 136/473 (29%)
Neur_chan_LBD 38..235 CDD:280998 65/202 (32%)
Neur_chan_memb 243..>334 CDD:280999 41/101 (41%)
LOC100330554XP_002662272.3 LIC 70..474 CDD:273305 139/480 (29%)
Neur_chan_LBD 71..276 CDD:280998 70/217 (32%)
Neur_chan_memb 283..471 CDD:280999 67/252 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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