DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nec and serpind1

DIOPT Version :9

Sequence 1:NP_524851.1 Gene:nec / 45908 FlyBaseID:FBgn0002930 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_001015716.1 Gene:serpind1 / 548433 XenbaseID:XB-GENE-6085731 Length:484 Species:Xenopus tropicalis


Alignment Length:377 Identity:105/377 - (27%)
Similarity:185/377 - (49%) Gaps:27/377 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 FSSELFKEI-IKSQSQQNVVFSPFSVHALLALIYGASDGKTFRELQKAGEFSKNAMAVAQDFE-- 171
            |...|::.| ..:.:..|::.:|..:...:|.|...:.|:...::.....| ||.:..:..:|  
 Frog   119 FGFNLYRAIKNNTDASDNILLAPVGISTAMATISLGTKGQALDQVLFTLGF-KNFINASSKYEIL 182

  Fly   172 ---SVIKYKKHL-----EGADLTLATKVYYNRELGGVNHSYDEYAKFYFSAGTEAVDMQNAKDTA 228
               :|.:...|.     .|..|.....:|..::. .:...:....|.|:.|..:.||. .:||..
 Frog   183 TLHNVFRKLTHRLFRRNFGYTLRSVNDIYVKKDF-VIREPFKNNLKNYYFAEAQMVDF-GSKDFL 245

  Fly   229 AKINAWVMDTTRNKIRDLVTPTDVDPQTQALLVNAVYFQGRWEHEFATMDTSPYDFQHTNGRISK 293
            .|.|..:...|:..|::.:  |:|||....||||.:||:|.||::|....|...:|:.....:.|
 Frog   246 TKANKRIQQLTKGLIKEAL--TNVDPALLMLLVNCIYFKGTWENKFPVEYTQNMNFRLNEKELVK 308

  Fly   294 VAMMFNDDVYGLAELPELGATALELAYKDSATSMLILLPNETTGLGKMLQQLSRPEFDLNRVAHR 358
            |.||.....:.:|..|||....|:|.|..: .||||:||::.:|: |:|::...|:. :.|..:.
 Frog   309 VPMMKTKGNFLVAADPELDCAVLQLPYVGN-ISMLIVLPHKLSGM-KLLEKQISPQV-VERWQNI 370

  Fly   359 LRRQSVAVRLPKFQFEFEQDMTEPLKNLGVHQMFTPNSQVTKLMDQPVRVSKILQKAYINVGEAG 423
            :..::..|.||:|:.|...::.|.|.|:||..:|| :...:.:.|:.:.:.....:..|.|.|.|
 Frog   371 MTNRTREVFLPRFKLEKSYNLQEVLSNMGVTDLFT-HGDFSGVSDKNMNIGLFQHQGTITVNEEG 434

  Fly   424 TEASAASYAKFVPLSLPPKPTEFVANRPFVFAV---RTPASVLFIGHVEYPT 472
            |||:|.:...|:|||...:   |||:|||:|.:   ||.. ::|:|.|..||
 Frog   435 TEAAAVTVVGFMPLSTQAR---FVADRPFLFLIYEHRTNC-LIFMGRVANPT 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
necNP_524851.1 SERPIN 108..468 CDD:238101 102/371 (27%)
serpind1NP_001015716.1 serpinD1_HCF2 38..484 CDD:381004 105/377 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.