DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nec and Serpina3n

DIOPT Version :9

Sequence 1:NP_524851.1 Gene:nec / 45908 FlyBaseID:FBgn0002930 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_113719.3 Gene:Serpina3n / 24795 RGDID:3747 Length:418 Species:Rattus norvegicus


Alignment Length:376 Identity:107/376 - (28%)
Similarity:191/376 - (50%) Gaps:26/376 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 FSSELFKEIIKSQSQQNVVFSPFSVHALLALIYGASDGKTFRELQKAGEFSKN---AMAVAQDFE 171
            |:..|:|::......:||||||.|:.|.||::...:.|.:..|:.:..:|:..   ...:.:.|.
  Rat    54 FAFSLYKKLALRNPDKNVVFSPLSISAALAVVSLGAKGNSMEEILEGLKFNLTETPETEIHRGFG 118

  Fly   172 SVI-KYKKHLEGADLTLATKVYYNRELGGVNHSYDEYAKFYFSAGTEAVDMQNAKDTAAKINAWV 235
            .:: :..:..:...::....::..:.| .|...:.|.||..:.|.....|.|.:::....||.:|
  Rat   119 HLLQRLSQPRDEIQISTGNALFIEKRL-QVLAEFQEKAKALYQAEAFTADFQQSREAKKLINDYV 182

  Fly   236 MDTTRNKIRDLVTPTDVDPQTQALLVNAVYFQGRWEHEFATMDTSPYDFQHTNGRISKVAMMFND 300
            ...|:.||:.|:  |::..:|..:|||.:||:|:|:..|...||...:|.....|..||.||..:
  Rat   183 SKQTQGKIQGLI--TNLAKKTSMVLVNYIYFKGKWKVPFDPRDTFQSEFYSGKRRPVKVPMMKLE 245

  Fly   301 DV---YGLAELPELGATALELAYKDSATSMLILLPNETTGLGKMLQQLS---RPEFDLNRVAHRL 359
            |:   |...|  ||..|.:||.|..:| |.|.:||::    ||| ||:.   :|| .|.|....|
  Rat   246 DLTTPYVRDE--ELNCTVVELKYTGNA-SALFILPDQ----GKM-QQVEASLQPE-TLRRWKDSL 301

  Fly   360 RRQSV-AVRLPKFQFEFEQDMTEPLKNLGVHQMFTPNSQVTKLM-DQPVRVSKILQKAYINVGEA 422
            |...: .:.||||....:.::.:.|..||:.::|:..:.::.:. |:.:.||:::.||.::|.|.
  Rat   302 RPSMIDELYLPKFSISADYNLEDVLPELGIKEVFSTQADLSGITGDKDLMVSQVVHKAVLDVAET 366

  Fly   423 GTEASAASYAKFVPLSLPPKPTEFVANRPFVFAVRTPASVL--FIGHVEYP 471
            ||||:||:..||||:|....|.....:|||:..:....:.:  |:..:..|
  Rat   367 GTEAAAATGVKFVPMSAKLDPLIIAFDRPFLMIISDTETAIAPFLAKIFNP 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
necNP_524851.1 SERPIN 108..468 CDD:238101 106/371 (29%)
Serpina3nNP_113719.3 serpinA3_A1AC 37..418 CDD:381019 107/376 (28%)
RCL 367..394 12/26 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.