DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nec and srp-6

DIOPT Version :9

Sequence 1:NP_524851.1 Gene:nec / 45908 FlyBaseID:FBgn0002930 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_504890.1 Gene:srp-6 / 179125 WormBaseID:WBGene00005647 Length:375 Species:Caenorhabditis elegans


Alignment Length:386 Identity:101/386 - (26%)
Similarity:173/386 - (44%) Gaps:43/386 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 DRFSSELFKEIIKSQS--------QQNV----VFSPFSVHALLALIYGASDGKTFRELQKAGEFS 160
            |..|.|....::.|::        |||:    ||||.|:...|:|::.|:.|:|..|::||....
 Worm     3 DSSSDEKMGLLLHSETDFGLSLLRQQNLTESFVFSPLSIALALSLVHVAAKGETRDEIRKALLNG 67

  Fly   161 KNAMAVAQDFESVIKYKKHLEGADLTLATKVYYNRELGGVNHSYDE----YAKFY-------FSA 214
            .....:.|.|.::        .|.|.:|.|   ..|:...||.:..    ..|.|       ::|
 Worm    68 ATDEELEQHFSNI--------SAGLLVAEK---GTEVNVANHIFSRKTFTIKKLYLNDVKKLYNA 121

  Fly   215 GTEAVDMQNAKDTAAKINAWVMDTTRNKIRDLVTPTDVDPQTQALLVNAVYFQGRWEHEFATMDT 279
            |...::.::.:.:|..||.:|.:.|:..|:.::.|..:..:..|:|.||.||:..|:.:|....|
 Worm   122 GASQLNFEDQEASAEAINNFVSENTKGHIKKIINPDSISEELVAVLTNAFYFKANWQTKFKKEST 186

  Fly   280 SPYDFQHTNGRISKVAMMFNDDVYGLAELPELGA-TALELAYKDSATSMLILLPNETTGLGKMLQ 343
              |..:..:...||....|........:..|.|. ..|.|.|||::.::.|.||....||.:.||
 Worm   187 --YKREFFSSENSKRETEFLHSRNSNRKYSENGQFQVLSLPYKDTSFALSIFLPKTRFGLSEALQ 249

  Fly   344 QLSRPEFDLNRVAHRLRRQSVAVRLPKFQFEFEQDMTEPLKNLGVHQMFTPNSQVTKLMDQPVRV 408
            .|.  ...:.::........|.:.:||::.|....:...|..:|:.:.||.::.::...| .:.:
 Worm   250 NLD--SVTIQQLMSNTSNTLVNIAMPKWKIETALGLNRALMAVGIEKAFTDSADLSNFAD-GIYI 311

  Fly   409 SKILQKAYINVGEAGTEASAASYAKFVPLSL---PPKPTEFVANRPFVFAVRTPASVLFIG 466
            |:...||.|.|.|.||.|:||:...|...|:   ..:|.||.|:.||:|.:......||||
 Worm   312 SQAAHKALIEVDEDGTVAAAATTISFSLTSVFIPAEEPIEFTADHPFLFILSKDNHPLFIG 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
necNP_524851.1 SERPIN 108..468 CDD:238101 101/386 (26%)
srp-6NP_504890.1 serpinL_nematode 16..374 CDD:381047 98/373 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.830

Return to query results.
Submit another query.