DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mr and Cul4

DIOPT Version :10

Sequence 1:NP_611862.1 Gene:mr / 45906 FlyBaseID:FBgn0002791 Length:802 Species:Drosophila melanogaster
Sequence 2:NP_610352.2 Gene:Cul4 / 35780 FlyBaseID:FBgn0033260 Length:821 Species:Drosophila melanogaster


Alignment Length:689 Identity:128/689 - (18%)
Similarity:246/689 - (35%) Gaps:195/689 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 TQFIDAINELHDSFQSLMQVKP---RLIQLVGAETKPT-----AKTVKLMQEEGIKNCLRDCLLA 161
            :..::.:..:|:|       ||   :.|.:...:.|||     :|...:..||.:       :..
  Fly    82 SNLLNRMGAIHNS-------KPGDVKKIVIKNFKDKPTLPDNYSKDTYVKLEEAV-------IAI 132

  Fly   162 QL--PPNFSVVVGAFYWVHFKLFTKASNLALTTVDSDVFDELLCVGCNFEAEQCCCQRLTDMVNK 224
            ||  |..:|:.         :|:....|:....:|:.::.:|              :.||:...|
  Fly   133 QLSKPIKYSLE---------ELYQAVVNMCSHKMDAQLYAKL--------------KELTEQHVK 174

  Fly   225 TNMKLFEMNLIDRLTGSALTALIKLKIKEH--------------------------------ISD 257
            .|:||.|      |||.::..||.|:...|                                |.|
  Fly   175 RNIKLKE------LTGGSMDKLILLEKINHWWLSFCQQMIMIRSIFLYMDRTYVLQNSTVHSIWD 233

  Fly   258 TCMGIF-------------------------------DRSHLKQLETWLSDVIM-------SWL- 283
            ..:.:|                               ||..||.|...|.|:.:       .:| 
  Fly   234 MGLDLFRIHFAQNSVVQKRTVDGLLTLIEKERQGSTVDRGLLKSLVRMLCDLQIYTSSFEEKFLD 298

  Fly   284 -TNIFTEWKSKDSISDIEVPESVKSFKVKLTYFMYETFAQSVIGQFFSIIIDYPDSIPAIDDLKI 347
             ||...:.:|:..:.::||||.::....:|        |:.  .:.....:|.....|.|.:   
  Fly   299 ATNQLYKAESQRKMQELEVPEYLQHVNKRL--------AEE--NERLRHYLDSSTKHPLIYN--- 350

  Fly   348 CMEKIDMRVYLTESLRNSLEARILHPGVNTMDILTGYVAAIKAIRHLDSTGVILEMVTAPIKDYL 412
             :||..:..:||..|:..|::.:....::.:.:|.|.::.:|     :.|..:    ......::
  Fly   351 -VEKELLAEHLTSILQKGLDSLLEDNRLSDLTLLYGLLSRVK-----NGTSEL----CGNFNGFI 405

  Fly   413 RKRNDTVRRVVTGLTEEGPT-DLSEELAKGETIKECKDSGTDEFSNWENWQPDPFGIDASIMQYN 476
            :|:..|:  |:....::... ||.:...|.:.|........::|:|         .:..:...:.
  Fly   406 KKKGRTI--VIDPEKDKSMVQDLLDFKDKMDVIVRTCFEHNEKFTN---------SLREAFEFFI 459

  Fly   477 SSRKMRSADIISMVVD----------------------------IYGSKELFMTEYRNLMADRLL 513
            :.|..:.|::|:..||                            |:| |::|...|:..:|.|||
  Fly   460 NQRANKPAELIAKYVDMKLRSGNKGTTDEELEKTLDKIMVLFRFIHG-KDVFEAFYKKDLAKRLL 523

  Fly   514 AQLDFNSEKEIRNLELLKIRFGESLLHSCEVMLKDVTDSKRIN----AHIHSDGDRTENQLFDIS 574
            .....:.:.|...|..||...|.......|.|.||:..|:.||    .|..|:.....|  .|:.
  Fly   524 VGKSASVDSEKSMLSKLKQECGGGFTSKLEGMFKDMELSRDINIAFRGHALSNNRDVHN--LDLC 586

  Fly   575 SLIVSAQFWPSFNKESLQLPEEIENEFKKYTKAYEAYKGNRTLNWRTVTGRVNIEIEIGDRTMEM 639
            ..|::..:||::....:.:|.:..|..:.:.|.|......|.|.|:...|...:..:......|:
  Fly   587 VSILTMGYWPTYAPTEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKEL 651

  Fly   640 VVSPILAVIIYHFQTKNEWTIEDLSSITKVPASALRRRL 678
            :||...|:::..|..|...:.|::.:.|.:....|||.|
  Fly   652 LVSLFQALVLLLFNDKPVLSYEEILAATLIEDGELRRTL 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mrNP_611862.1 CULLIN 494..632 CDD:214545 35/141 (25%)
ANAPC2 741..800 CDD:462556
Cul4NP_610352.2 Cullin 124..722 CDD:459983 119/640 (19%)
Cullin_Nedd8 753..813 CDD:463146
Blue background indicates that the domain is not in the aligned region.

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