DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and CHD1L

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_004275.4 Gene:CHD1L / 9557 HGNCID:1916 Length:897 Species:Homo sapiens


Alignment Length:626 Identity:140/626 - (22%)
Similarity:249/626 - (39%) Gaps:192/626 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   437 VSLMNHQKHALAWMSWRERKLPRGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSE 501
            :.|.::|...:.|::.|.. ...|.||.|:||||||...|:..:..                   
Human    44 IHLRSYQLEGVNWLAQRFH-CQNGCILGDEMGLGKTCQTIALFIYL------------------- 88

  Fly   502 DDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKG 566
                           .||.:. .|..|::||.|:|..|:.|::.......   ||.:..::|.:.
Human    89 ---------------AGRLND-EGPFLILCPLSVLSNWKEEMQRFAPGLS---CVTYAGDKEERA 134

  Fly   567 KYLRD------YDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVRN-----HKSQSSLAVC 620
            ...:|      :.:::|||:|..::...|.:   ..|..:::||||.::|     ||:.|..:|.
Human   135 CLQQDLKQESRFHVLLTTYEICLKDASFLKS---FPWSVLVVDEAHRLKNQSSLLHKTLSEFSVV 196

  Fly   621 DLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWID--------NKSAGGQNRLNL 677
                 :...||||||||...::|:||.|:.    .||.:.::..|        .|.:...:.|:.
Human   197 -----FSLLLTGTPIQNSLQELYSLLSFVE----PDLFSKEEVGDFIQRYQDIEKESESASELHK 252

  Fly   678 LMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQTVMTYSRTLFAQFLHQRAERE 742
            |::..:|||.||::.::     ||.|...:|...:...:...|:.::......|        |.|
Human   253 LLQPFLLRRVKAEVATE-----LPKKTEVVIYHGMSALQKKYYKAILMKDLDAF--------ENE 304

  Fly   743 TDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGLIDA 807
            |                                    .|:||..:|   |.:||:...||.|.|.
Human   305 T------------------------------------AKKVKLQNI---LSQLRKCVDHPYLFDG 330

  Fly   808 MLDGEESQTMGDHSSDSDTPEIDLLAQLNKLAITDTSTDGQQSVANAGDDGPPLLPDEARIAKAS 872
            :  ..|...:|||.:::                                                
Human   331 V--EPEPFEVGDHLTEA------------------------------------------------ 345

  Fly   873 KNLLKRSNPVFNLHRPSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLS 937
                            |.|::::.::|  :.|.|...:.::.||.|.:||||:|::...|.:...
Human   346 ----------------SGKLHLLDKLL--AFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYER 392

  Fly   938 LNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRI 1002
            ::|::..:.|...:..|..:  ...|.|||..|||||:||..|:.::.:|..:|||.:.||..|.
Human   393 VDGSVRGEERHLAIKNFGQQ--PIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARA 455

  Fly  1003 YRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTG 1043
            :|:||.|:|.:.:.:..||||:.:......||.|.:.::.|
Human   456 HRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319 139/622 (22%)
DEXHc_TTF2 439..686 CDD:350830 63/265 (24%)
CHD1LNP_004275.4 PLN03142 46..699 CDD:215601 140/624 (22%)
DEAH box 174..177 2/2 (100%)
Regulatory linker segment (RLS). /evidence=ECO:0000269|PubMed:33357431 601..635
Required for ATPase activity. /evidence=ECO:0000269|PubMed:29220653 615..673
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 628..654
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 687..711
Macro_Poa1p-like_SNF2 716..866 CDD:394880
Blue background indicates that the domain is not in the aligned region.

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