DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lds and ULS1

DIOPT Version :9

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_014834.1 Gene:ULS1 / 854363 SGDID:S000005717 Length:1619 Species:Saccharomyces cerevisiae


Alignment Length:1268 Identity:306/1268 - (24%)
Similarity:501/1268 - (39%) Gaps:378/1268 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NSSLGRSRKSSRLSKS------------SRLSKSSR--PSSAGVVIDETQSE----EEESQSSET 66
            ||.:.| ||.||..|.            :.:::..|  .|:..:::||.:::    :|:.|.:::
Yeast   501 NSEILR-RKLSRREKEVSDAEKHWQLLLTSMARGGRTISSTQQILVDEAENQLNKLKEKRQLTKS 564

  Fly    67 A------------ESEKSDESDNSQNSQES----EDSEDDSVRPSARNTKRKPLGIPSDSEDEED 115
            .            |..||.....:.|.|:|    |.|..||...:..|.:.:.|   ::.|..:.
Yeast   565 KLDSINLKMYNYNEQWKSFVHSKNINLQKSLAALERSARDSKASATVNKRNECL---AEKEKLDQ 626

  Fly   116 ELEQRALSPSTRMSITGVRPQDLSDDDSEIEYSDEVQEGPTEAPTAEAVVPRYTTQFAGNIQNDL 180
            .|::..||.||...:||...|.|:|          ::.|........:|:|            .:
Yeast   627 MLKEGTLSFSTYKQLTGEIQQKLND----------LKLGDQRTTDINSVLP------------IV 669

  Fly   181 HSTIGAADSEVLDDSSGSDVLILSNKETPI--EILSSTDDDATTNKENMSGPPFERPSKSL---S 240
            ...:...|..:....:..|:|..:...|.:  .||....|:..:.|.      |....:||   :
Yeast   670 RQPLAKRDLFIKSIDTAKDLLAKNTSRTEMTKRILYRHLDNLVSYKN------FFEDGRSLIDIN 728

  Fly   241 PRSSAGASV-VKTSKNLSQPTIQAVLK----QKTSPAAPRRSRIKSEDQKVVSQVVYDEEMRKLA 300
            .|..|..|. :..:..:..|.:...|:    :.::||.....| :::..|.:      |..|.|.
Yeast   729 RRHVAHESAQILFTNGVKMPIVFETLQDYGIKFSNPAIVNPDR-RAQYFKSI------EVARDLI 786

  Fly   301 EKRVQVSDAEKLFEKVAHKLPDKGSQIMKRIDT------LRRE-------------LAMDEQWIS 346
            .|..:..||::...:..:.:    .:..|.|||      |:||             |.||..:.:
Yeast   787 SKSTRSEDAKRKITRFLNII----EEFRKDIDTGFPPTPLKREGVGKAVVGLRQQGLKMDRLYEN 847

  Fly   347 ALR----------VQQSNVPAVRVVKPTLNPPRAPSIDTLDW------DELSEAVNEIKPVYTGA 395
            ..|          :|||      .:.|.....|.||    :|      ::.|...|::     ..
Yeast   848 LRRYKIPITSEELLQQS------YLFPVNADQRPPS----NWNIVENTEDTSSTANDL-----SM 897

  Fly   396 QGMATFNNQKALTLESLKDLHVSLEDLPGPEVL----AEDPVGLKVSLMNHQKHALAWMSWRERK 456
            |.....:|..|  .|..:.:...||::...|.:    |..|..:.|:|:.||:..|.|:...|..
Yeast   898 QDEFHISNMHA--AEDQEQIRALLENVKQSESIIDGEALTPEDMTVNLLKHQRLGLHWLLQVENS 960

  Fly   457 LPRGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKD 521
            ..:||:||||||||||:..|:.:||                :.||:.|.|.              
Yeast   961 AKKGGLLADDMGLGKTIQAIALMLA----------------NRSEESKCKT-------------- 995

  Fly   522 TRRGGTLVVCPASLLRQWESEVESKV-SRQKLTVCVHHGNNRETKGKYLRD---YDIVVTTYQIV 582
                 .|:|.|.|:||.|:.|:|:|| .|.|.|..: .|.:...|.|:.||   ||.|:.:||.:
Yeast   996 -----NLIVAPVSVLRVWKGELETKVKKRAKFTTFI-FGGSGNGKVKHWRDLARYDAVLVSYQTL 1054

  Fly   583 AREHK------------SLSAVFGVK---------------------WRRIILDEAHVVRNHKSQ 614
            |.|.|            .|.||..::                     :.||:|||...::|..::
Yeast  1055 ANEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFYRILLDEGQNIKNKNTR 1119

  Fly   615 SSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWI--------------- 664
            :|.|.|.:.|.|||.|:||||||...::|:|::|||..|:.....:|..|               
Yeast  1120 ASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHKEQRFKLDIGRFFQRNKQYQYDNE 1184

  Fly   665 DNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGK-LNSLPNKELRLIEISLDKEEMNVYQTVMTYSR 728
            |.|:|  ..::.:|:.::||||:||. :.||| |..||.|.:.:.|..|..||:..|..:.:.::
Yeast  1185 DRKNA--LRKVRVLLNAIMLRRSKAD-KIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQ 1246

  Fly   729 TLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLL 793
            .|..:.|                |..|       .|:|                   ..:|.|||
Yeast  1247 ALAKKLL----------------NNST-------RGSY-------------------SSVLTLLL 1269

  Fly   794 RLRQICCHPGLIDAMLDGEESQTMGDHSSD------------------------SDTPEIDLLAQ 834
            ||||.|||..|:          .||:..::                        |...:..::..
Yeast  1270 RLRQACCHSELV----------VMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSGEAQAQVITS 1324

  Fly   835 LNKLA----------------------ITDT----------------STDGQ---------QSVA 852
            :|.:.                      |.||                .|.|.         |.:.
Yeast  1325 MNSMTCFWCMEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGGAFAIPCKDCQRLT 1389

  Fly   853 NAGDDGPPLLPDEA-------------RIAKASKNLLKRSN---PVFNLHRPSSKINMVIQILKT 901
            |..|.....|.|:.             .:::..|..:::.|   |.|....||:||...||:::.
Yeast  1390 NEKDIVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQR 1454

  Fly   902 SILKSSDDKAIVVSQWTSVLDILRDHL-SKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLL 965
            ...:|:.:|.|:.||:|:..:||...| :|.....|...|::..:.|.|::|||. |:.:||:||
Yeast  1455 VFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFY-RDPEKRILL 1518

  Fly   966 LSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQ 1030
            :|:.||..||.|..|||::::|..|||.:|.|||||.||:.|.|.|.::|....|:||.||..||
Yeast  1519 ISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISELQ 1583

  Fly  1031 DKKLDLADGVLTGAKVS--SKLTIDDLKGLFGM 1061
            .:|.::.|..:...|:.  :.|...:|..|||:
Yeast  1584 KRKKEMVDSAMDPGKIKEVNSLGRRELGFLFGL 1616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 SNF2_N 442..805 CDD:278600 121/415 (29%)
DEXDc 459..634 CDD:238005 64/211 (30%)
HELICc 885..1014 CDD:238034 52/129 (40%)
ULS1NP_014834.1 HepA 629..1617 CDD:223627 278/1136 (24%)
DEXDc_SHPRH-like 943..1204 CDD:350766 89/298 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 305 1.000 Inparanoid score I488
Isobase 1 0.950 - 0 Normalized mean entropy S3486
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000507
OrthoInspector 1 1.000 - - mtm9251
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2250
SonicParanoid 1 1.000 - - X1278
TreeFam 1 0.960 - -
87.900

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