DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and AT1G05120

DIOPT Version :9

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001323244.1 Gene:AT1G05120 / 839319 AraportID:AT1G05120 Length:876 Species:Arabidopsis thaliana


Alignment Length:961 Identity:239/961 - (24%)
Similarity:375/961 - (39%) Gaps:343/961 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 IKSEDQKVVSQVVYDEEMRKLAEKRVQVSDAEKLFEKVAH-KLPD-----------KGSQIMKRI 331
            |.|:|..:.|:...|||            :.|:|.|.||: .||:           :.|:..|:.
plant    77 ISSDDDSIGSEFQGDEE------------EEEELEEVVANDDLPNPVPVLAIVNLPRASKKRKKP 129

  Fly   332 DTLRRELAMDEQWISALRVQQSNVPAVRVVKPTLNPPRAPSIDTLDW--DELSEAVNEIKPVYTG 394
            |..:.::.:  .|.:..:.|.|                        |  :.:||.|:        
plant   130 DARKEKVVL--LWETWEKEQNS------------------------WIDEHMSEDVD-------- 160

  Fly   395 AQGMATFNNQKALTLESLKDLHVSLEDLPGPEVLAEDPVGLKVSLMNHQKHALAWMSWRERKLPR 459
                  .:...|:..|:                 ||.|..|.:.|:.:||..|||.:.:|:.: .
plant   161 ------LDQHNAVIAET-----------------AEPPSDLIMPLLRYQKEFLAWATKQEQSV-A 201

  Fly   460 GGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRR 524
            ||||||:||:|||:..||.|||                          |:.|    .:.:.....
plant   202 GGILADEMGMGKTIQAISLVLA--------------------------RREV----DRAQFGEAA 236

  Fly   525 GGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREH--- 586
            |.|||:||...:.||.:|:....|.....|.|:||..|....|...:||.|:|||..|..|:   
plant   237 GCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESEYRRN 301

  Fly   587 ----------------------------------------------------------------- 586
                                                                             
plant   302 IMPSKVQCAYCSKSFYPKKLVIHLRYFCGPSAVKTAKQSKQKRKKTSDSSSQQGKEADAGEDKKL 366

  Fly   587 --------------------KSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALT 631
                                |..|.:..|||.||||||||.::..:|.::.||..|...|||||:
plant   367 KKSKKKTKQTVEKDQLGSDDKEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALS 431

  Fly   632 GTPIQNKELDVYALLKFLRCSPFDDL----------------------HT-------WKKWIDNK 667
            |||:||:..::|:|::||:..|:...                      |.       |.|::...
plant   432 GTPLQNRVGELYSLIRFLQIRPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKP 496

  Fly   668 -----SAG-GQNRLNLL----MKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQT 722
                 |.| |:..:.||    :|.::|||||....:|   .:||.:.:.|...:||.:|.:.|::
plant   497 ITVYGSFGLGKRAMILLKHKVLKDILLRRTKLGRAAD---LALPPRIITLRRDTLDVKEFDYYES 558

  Fly   723 VMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHD 787
            :...|              :.:||        ||.:                  ||:.....:| 
plant   559 LYKNS--------------QAEFN--------TYIE------------------AGTLMNNYAH- 582

  Fly   788 ILVLLLRLRQICCHPGL-IDAMLDGEESQTMGDHSSDS------DTPE----------------I 829
            |..||.||||...||.| :.:...|..:..:.::.|:.      |..|                |
plant   583 IFDLLTRLRQAVDHPYLVVYSNSSGANANLVDENKSEQECGLCHDPAEDYVVTSCAHVFCKACLI 647

  Fly   830 DLLAQL--------NKLAITDTSTDGQQSVANAGDDGPPLLPDEARIAKASKNLLK--RSNPVFN 884
            ...|.|        :||...|.:|.....                  .||||..||  |::.:.|
plant   648 GFSASLGKVTCPTCSKLLTVDWTTKADTE------------------HKASKTTLKGFRASSILN 694

  Fly   885 L-----HRPSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPV 944
            .     .:.|:||..:.:.::..:.:....||||.||:||.||::...|.|.||:.:.|.|::.:
plant   695 RIKLDDFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTM 759

  Fly   945 KNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKK 1009
            ..|...:|:|.: :...||.|:||.||||.|||..|:|:.::|..|||.:|.||||||:|:||.|
plant   760 AARDTAINKFKE-DPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYK 823

  Fly  1010 NVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAKVS-SKLTIDDLKGLF 1059
            .:.:.:|:..:|||:||..||.||..:.:|.:.|::.: .|||.:|::.||
plant   824 PIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQEAIGKLTEEDMRFLF 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 SNF2_N 442..805 CDD:278600 120/490 (24%)
DEXDc 459..634 CDD:238005 65/262 (25%)
HELICc 885..1014 CDD:238034 51/133 (38%)
AT1G05120NP_001323244.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 94 1.000 Domainoid score I2515
eggNOG 1 0.900 - - E1_COG0141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D132523at2759
OrthoFinder 1 1.000 - - FOG0000507
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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