DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and HDH

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_568981.2 Gene:HDH / 836509 AraportID:AT5G63890 Length:466 Species:Arabidopsis thaliana


Alignment Length:461 Identity:98/461 - (21%)
Similarity:162/461 - (35%) Gaps:105/461 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SRKSSRLSK--SSRL-SKSSRP--------SSAGVVIDETQSEEEESQSSETAESEKSDESDNSQ 79
            |.||.|||:  ||:: |..|||        ::...:||..:|      :.:.|..|.::..|..|
plant    31 SMKSYRLSELSSSQVDSLKSRPRIDFSSIFATVNPIIDAVRS------NGDNAVKEYTERFDKVQ 89

  Fly    80 NSQESEDSEDDSVRPSARNTKRKPLGIPSDSEDEEDELEQRALSPSTRMSITGVRPQDLSDDDSE 144
            .::..||..:.|| |...:..::...:..|: .....|.|::...|.. ::.|||.:.:|.....
plant    90 LNKVVEDMSELSV-PELDSNVKEAFDVAYDN-IYAFHLAQKSTEKSVE-NMKGVRCKRVSRSIGS 151

  Fly   145 IEYSDEVQEGPTEAPTAEAVVPRYTTQFAGNIQNDLHSTIGAADSEVLDDSSGSDVLILSNKETP 209
            :         ....|...||:|......|...|.....|:..|.....|.|...:||..:.:...
plant   152 V---------GLYVPGGTAVLPSTALMLAIPAQIAGCKTVVLATPPSKDGSICKEVLYCAKRAGV 207

  Fly   210 IEILS----------STDDDATTNKENMSGP--PFERPSKSLSPRSSAGASVVKTSKNLSQPT-- 260
            ..||.          :...|:....|.:.||  .:...:|.:...|.|..|:       ..|.  
plant   208 THILKAGGAQAIAAMAWGTDSCPKVEKIFGPGNQYVTAAKMILQNSEAMVSI-------DMPAGP 265

  Fly   261 --IQAVLKQKTSP---AAPRRSRIK-SEDQKVVSQVVYDEEMRKLAEKRVQVSDAEKLFEKVAHK 319
              :..:..:..||   ||...|:.: ..|.:||..||.|.         |.::..|:...|....
plant   266 SEVLVIADEHASPVYIAADLLSQAEHGPDSQVVLVVVGDS---------VDLNAIEEEIAKQCKS 321

  Fly   320 LPDKGSQIMKRIDTLRRELAMDEQWISALRVQQSNVPAVRVVKPTLNPPRAPSIDTLDWDELSE- 383
            || :|....|.:.......|.|  .|.|:.......|...::...         |...|:.|.| 
plant   322 LP-RGEFASKALSHSFTVFARD--MIEAISFSNLYAPEHLIINVK---------DAEKWEGLIEN 374

  Fly   384 -------------------AVNEIKPVYTGAQ---GMATFNNQKALTLESLKDLHVSLEDLPGPE 426
                               ..|.:.|.|..|:   |::..:..|.:|::||.:  ..|.:| ||.
plant   375 AGSVFIGPWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKFMTVQSLTE--EGLRNL-GPY 436

  Fly   427 V--LAE 430
            |  :||
plant   437 VATMAE 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319 36/169 (21%)
DEXHc_TTF2 439..686 CDD:350830
HDHNP_568981.2 PLN02926 30..460 CDD:215500 98/461 (21%)
Blue background indicates that the domain is not in the aligned region.

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