DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lds and RGD3

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001190085.1 Gene:RGD3 / 824595 AraportID:AT3G54280 Length:2129 Species:Arabidopsis thaliana


Alignment Length:1016 Identity:231/1016 - (22%)
Similarity:396/1016 - (38%) Gaps:326/1016 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 SGSDVLI--------LSNKETP-IEILSSTD--DDATTNKENMSGPPFERPSKSLSPRSSAG--- 246
            |.:|.||        :...||| ..|:||.|  ||                ...||.||:.|   
plant  1174 SPNDKLIKNICSLTCMDPSETPQASIISSMDIVDD----------------MDFLSSRSNTGKQK 1222

  Fly   247 ASVVKTSKNLSQPTIQAVLKQKTSPAAPRRSRIKSEDQ---------KVVSQVVYDE---EMRKL 299
            |.||..|.. .:..::..:.::.|..|.:...:|....         :.:::|:..|   :.:|:
plant  1223 AKVVLASGE-DRSKVEGFITRRGSELALKHLSLKFGGSLFDKLPKLWECLTEVLVPEIPSDQQKI 1286

  Fly   300 AEKRVQVSDAEKLFEKVAHKLPDKGSQIMKRIDTLRRELAMDEQWISALR-----VQQSNVPAVR 359
            ..|...:||.:.|...:         |:::.|..:..| .:..:.:|.|.     |:.|:| |||
plant  1287 DLKIESISDPQVLINNI---------QVVRSIAPVMEE-TLKPRLLSLLPCIFKCVRHSHV-AVR 1340

  Fly   360 VVKPTLNPPRAPSIDTLDWDELSEAVNEIKPV------YTGAQG--------------------- 397
            :.........|.|:.|   |.::..|....|:      .:|.||                     
plant  1341 LAASRCVMTMAKSMTT---DVMAAVVESAIPMLGDLTCISGRQGAGMLIGLLVQGLGVELVPYSP 1402

  Fly   398 ------MATFNNQKALTLESL------------------------KDLHVSLEDLPGPEVLAEDP 432
                  :...::..:...:|:                        |||..:.||....|.|.::.
plant  1403 LLVVPLLRCMSDVDSSVRQSVTRSFAALVPMLPLARGVPPPVGLSKDLSSNAEDAKFLEQLLDNS 1467

  Fly   433 --------VGLKVSLMNHQKHALAWMSWRER-KLPRGGILADDMGLGKTLTMISSVLACKNGQEM 488
                    ..|||.|..:|:..:.|:.:.:| ||  .|||.||||||||| ..|:::|       
plant  1468 HIDDYKLCTELKVQLRRYQQEGINWLGFLKRFKL--HGILCDDMGLGKTL-QASAIVA------- 1522

  Fly   489 SEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGT--------LVVCPASLLRQWESEVES 545
                     ||:.:                    |||.|        ::|||::|:..|..|:|.
plant  1523 ---------SDAAE--------------------RRGSTDELDVFPSIIVCPSTLVGHWAFEIEK 1558

  Fly   546 KVSRQKLTVCVHHGN--NRETKGKYLRDYDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVV 608
            .:....|:|..:.|:  :|.:..:...::::::|:|.:|   .|.:..:....|...||||.|::
plant  1559 YIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVV---RKDVDYLTQFSWNYCILDEGHII 1620

  Fly   609 RNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFL------------------------ 649
            :|.||:.:.||..|:.::|..|:||||||..:::::|..||                        
plant  1621 KNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARD 1685

  Fly   650 -RCSPFDDLHTWKKWIDNKSAGGQNRLNLLMKSLM---LRRTKAQLQSDGKLNSLPNKELRLIEI 710
             :||..|            :..|...:..|.|.:|   |||||.::.||     ||.|.::....
plant  1686 PKCSAKD------------AEAGVLAMEALHKQVMPFLLRRTKEEVLSD-----LPEKIIQDRYC 1733

  Fly   711 SLDKEEMNVYQTVMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFAR 775
            .|...::.:|:           ||....|::|.....:.|.:..:.|                |.
plant  1734 DLSPVQLKLYE-----------QFSGSSAKQEISSIIKVDGSADSGN----------------AD 1771

  Fly   776 MAGSKKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMGDHSSDSDTPEIDLLAQLNKLAI 840
            :|.:|........|..||:|   |.||.|:           :||..::....  ||.|.:|  ..
plant  1772 VAPTKASTHVFQALQYLLKL---CSHPLLV-----------LGDKVTEPVAS--DLAAMIN--GC 1818

  Fly   841 TDTSTDGQQSVANAGDDGPPLLPDEARIAKASKNLLKRSNPVFNLHR--PSSKINMVIQILKT-- 901
            :|..|:                                      ||:  .|.|:..:.:||:.  
plant  1819 SDIITE--------------------------------------LHKVQHSPKLVALQEILEECG 1845

  Fly   902 --SILKSSD-------DKAIVVSQWTSVLDILRDHLSK---DGVATLSLNGTIPVKNRQDIVNEF 954
              |...|||       .:.::.:|..::|||:...|.:   ..|..:.|:|::..:.|.:||..|
plant  1846 IGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAF 1910

  Fly   955 NDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCV 1019
            |. :....||||:...||:||||..|:.|:.::..|||..:.||.||.:|:|||:.|.:::.:..
plant  1911 NS-DPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMR 1974

  Fly  1020 DTVEQRIKGLQDKKLDLADGVLTGAKVSSK-LTIDDLKGLF 1059
            .|:|:::..||..|:.:|:.|:.....|.| :..|.|..||
plant  1975 GTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLF 2015

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319 199/881 (23%)
DEXHc_TTF2 439..686 CDD:350830 72/285 (25%)
RGD3NP_001190085.1 HEAT repeat 9..34 CDD:293787
HEAT repeat 46..73 CDD:293787
HEAT repeat 541..566 CDD:293787
HEAT repeat 579..607 CDD:293787
HEAT repeat 619..668 CDD:293787
HEAT repeat 677..724 CDD:293787
HEAT repeat 735..764 CDD:293787
DUF3535 813..1270 CDD:463447 25/112 (22%)
HepA 1378..1996 CDD:440319 175/760 (23%)
Blue background indicates that the domain is not in the aligned region.

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