DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment lds and AT3G16600

DIOPT Version :9

Sequence 1:	NP_524850.2	Gene:	lds / 45894	FlyBaseID:	FBgn0002542	Length:	1061	Species:	Drosophila melanogaster
Sequence 2:	NP_188282.1	Gene:	AT3G16600 / 820911	AraportID:	AT3G16600	Length:	638	Species:	Arabidopsis thaliana

Alignment Length:	716	Identity:	215/716 - (30%)
Similarity:	319/716 - (44%)	Gaps:	179/716 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly   374 DTLDWDELS-EAVNEIKPVYTGAQGMATFNNQKALTLESLKDLHVSLEDLPGPEVLAEDPVG-LK 436
            ||:|....| |.|.|.|          |..|::.:       ...:|:||..|:...:.|.| |.
plant     3 DTMDMSSGSDEEVQEEK----------TTVNERVI-------YQAALQDLKQPKTEKDLPPGVLT 50

  Fly   437 VSLMNHQKHALAWMSWRERKLPR--GGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSD 499
            |.||.|||.||.||..:|::...  |||||||.|||||::.||.:|       :.:.|.:|
plant    51 VPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLIL-------LQKLKSQS---- 104

  Fly   500 SEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVS-RQKLTVCVHHGNNRE 563
                  |:||         ||....||||:|||||:::||..||:.||| ..||:|.||||::|.
plant   105 ------KQRK---------RKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRT 154

  Fly   564 TKGKYLRDYDIVVTTYQIVARE---------------HKSL----------SAVFGVKWRRIILD 603
            .....:..||:|:|||.||..|               .:||          .|:..|:|.|::||
plant   155 KDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLD 219

  Fly   604 EAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTW----KKWI 664
            |||.::||::..:.|...||.|.||.||||||:||..|:|:..:|||..|:...:::    |..|
plant   220 EAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPI 284

  Fly   665 DNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQTVMTYSRT 729
            |.|...|..:|..:::.:||||||                           |.:.|:.:...||.
plant   285 DKKPLHGYKKLQAILRGIMLRRTK---------------------------EWSFYRKLELNSRW 322

  Fly   730 LFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLR 794
            .|.:             |.:|..                :||..|.            :||:|||
plant   323 KFEE-------------YAADGT----------------LHEHMAY------------LLVMLLR 346

  Fly   795 LRQICCHPGLIDAMLDGEESQTMGDHSSDSDTPEIDLLAQLNKLAITDTSTDGQQSVANAGDDGP 859
            |||.|.||.|::.....:.::.|.|  .....|..:|:..|:.|.::.|:.    ||.:    .|
plant   347 LRQACNHPQLVNGYSHSDTTRKMSD--GVRVAPRENLIMFLDLLKLSSTTC----SVCS----DP 401

  Fly   860 PLLPDEARIAK------ASKNLLKRSN--PVFNLHRPSSKINMVIQILKTSILKSSDD----KAI 912
            |..|.......      .|.|:...:|  |..|.|.......:..:....|.:...||    .|:
plant   402 PKDPVVTLCGHVFCYECVSVNINGDNNTCPALNCHSQLKHDVVFTESAVRSCINDYDDPEDKNAL 466

  Fly   913 VVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQD--IVNEFNDRNNQKRVLLLSLTAGGVGL 975
            |.|:  .|..|......:|        .::..:.||.  ..|:.|..:.....:|:||.||.:||
plant   467 VASR--RVYFIENPSCDRD--------SSVACRARQSRHSTNKDNSISGLVCAMLMSLKAGNLGL 521

  Fly   976 NLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGV 1040
            |::.|:|::||||.|||..|.||.||.:|:||.:.|.:.:....:|||:||..|.::|.::....
plant   522 NMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASA 586

  Fly  1041 L 1041
            |
plant   587 L 587

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lds	NP_524850.2	SNF2_N	442..805	CDD:278600	129/394 (33%)
		DEXDc	459..634	CDD:238005	77/202 (38%)
		HELICc	885..1014	CDD:238034	40/134 (30%)
AT3G16600	NP_188282.1	SNF2_N	56..357	CDD:278600	129/394 (33%)
		DEXDc	76..250	CDD:238005	77/199 (39%)
		RING	395..431	CDD:214546	8/43 (19%)
		Helicase_C	<508..552	CDD:278689	23/43 (53%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	298	1.000	Inparanoid score	I793
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D132523at2759
OrthoFinder	1	1.000	-	-		FOG0000507
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1278
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	5	4.970