DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lds and PIE1

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_187887.3 Gene:PIE1 / 820463 AraportID:AT3G12810 Length:2055 Species:Arabidopsis thaliana


Alignment Length:1304 Identity:278/1304 - (21%)
Similarity:479/1304 - (36%) Gaps:433/1304 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LGRSRKSSRLSKSSRLSKSSRPSSAGVVIDETQSEE----EESQ--------------------- 62
            |.:..:|.|..|.::..|.:..:|.| ::|:...||    ||.|                     
plant    58 LSKDFESERKWKLAQAKKVALRASKG-MLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVE 121

  Fly    63 -----SSETAESEKSDESDN-------SQNSQESEDSEDDSVRP--SARNTKRKPLGIPSDSEDE 113
                 ..:...:||..::.:       .|..:.|....::.|.|  ..:||..||| :..:|:.:
plant   122 KLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKQGQNTPSKPL-LTIESKSD 185

  Fly   114 EDELEQRALSPSTRMSITGVRPQ-----------DLSDDDSEIEYSD------------EVQEGP 155
            |:..||.....::...:....|:           :..||:..||..:            |..:..
plant   186 EERAEQIPPEINSSAGLESGSPELDEDYDLKSEDETEDDEDTIEEDEKHFTKRERQEELEALQNE 250

  Fly   156 TEAPTAEAVVPRYTTQFAGNIQNDLHSTIGAADSEVLDDSSGSDVLILSNKETPI-----EILSS 215
            .:.| .|.::.|||   :|.:         :.::..:.|.:..::..:|...:|:     :.|:|
plant   251 VDLP-VEELLRRYT---SGRV---------SRETSPVKDENEDNLTSVSRVTSPVKDENQDNLAS 302

  Fly   216 TDDDATTNKENMSGPPFERPSKSLSPRSSAGASVVKTSKNLSQPTIQAVLKQKTSPAAPRRSRIK 280
            ...|...:|.|::.          |..:....||.:::.:.....|.........|.....| :|
plant   303 VGQDHGEDKNNLAA----------SEETEGNPSVRRSNDSYGHLAISETHSHDLEPGMTTAS-VK 356

  Fly   281 S----------EDQKVVSQVV-----YDEEMRKLAEKRVQVSDAEKLFEKVAHKLPDKGSQIMKR 330
            |          ::|:.|..|:     .|:|.....|:.:..:|.|...|::|  |..|.|::...
plant   357 SRKEDHTYDFNDEQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIA--LLQKESEMPIE 419

  Fly   331 IDTLR-------RELAMDEQWISALRVQQSNVPAVRVVKPTLNPPRAPSIDTLDWD--ELSEAVN 386
            :...|       ::::.||. .|:..|.:.:     :|....|..:|    .||.|  :|:|...
plant   420 VLLARYKEDFGGKDISEDES-ESSFAVSEDS-----IVDSDENRQQA----DLDDDNVDLTECKL 474

  Fly   387 EIKPVYTGAQGMATFNNQKALTLESLKDLHVSLEDLPGPEVLAEDPVG---------------LK 436
            :.:|.....:|  ||:.   :..::.||....:.|.......|: |.|               ||
plant   475 DPEPCSENVEG--TFHE---VAEDNDKDSSDKIADAAAAARSAQ-PTGFTYSTTKVRTKLPFLLK 533

  Fly   437 VSLMNHQKHALAWM-SWRERKLPRGGILADDMGLGKTLTMISSV--LACKNGQEMSEGKDESSDS 498
            .||..:|...|.|: :..|:||  .|||||:||||||:..|:.:  |||..|.            
plant   534 HSLREYQHIGLDWLVTMYEKKL--NGILADEMGLGKTIMTIALLAHLACDKGI------------ 584

  Fly   499 DSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRE 563
                           |          |..|:|.|.|::..||:|........|  :..:.|:.:|
plant   585 ---------------W----------GPHLIVVPTSVMLNWETEFLKWCPAFK--ILTYFGSAKE 622

  Fly   564 TKGK-----YLRDYDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLR 623
            .|.|     .|..:.:.:|||::|.::.|....   .||:.:||||||:::|.|||....:.:..
plant   623 RKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKR---KKWKYLILDEAHLIKNWKSQRWQTLLNFN 684

  Fly   624 GKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWIDNKSAG---GQ--------NRLNL 677
            .|.|..|||||:||..:::::|:.||....|.....:|.|..|..||   ||        :||:.
plant   685 SKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHN 749

  Fly   678 LMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQTVMTYSRTLFAQFLHQRAERE 742
            :::..:|||.|..::     ..||:|...:|...|.|.:.|:|:..:              |..|
plant   750 VLRPFLLRRLKRDVE-----KQLPSKHEHVIFCRLSKRQRNLYEDFI--------------ASTE 795

  Fly   743 TDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGLID- 806
            |.....|              |:::.|                   :.::::||::|.||.|.: 
plant   796 TQATLTS--------------GSFFGM-------------------ISIIMQLRKVCNHPDLFEG 827

  Fly   807 ---------AMLDGEESQTMGDHSSDSDTPEIDLLA---QLNKLAITDTSTDGQQSVA------- 852
                     |.:|.:.|.|:.....:|...::||.|   ....|..:.||.:|.:..|       
plant   828 RPIVSSFDMAGIDVQLSSTICSLLLESPFSKVDLEALGFLFTHLDFSMTSWEGDEIKAISTPSEL 892

  Fly   853 -----NAGDD--GPPLLPD-------------------EARIAKAS------------------- 872
                 |..||  ..||.|.                   |.||.::.                   
plant   893 IKQRVNLKDDLEAIPLSPKNRKNLQGTNIFEEIRKAVFEERIQESKDRAAAIAWWNSLRCQRKPT 957

  Fly   873 -----KNLL-------------------------------------------------------- 876
                 :.||                                                        
plant   958 YSTSLRTLLTIKGPLDDLKANCSSYMYSSILADIVLSPIERFQKMIELVEAFTFAIPAARVPSPT 1022

  Fly   877 ----KRSNPVFNLHRPSSKINMVIQILKTSI---------------------------------L 904
                |..:|||.......|:..::..|.:.|                                 |
plant  1023 CWCSKSDSPVFLSPSYKEKVTDLLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAMLLRKL 1087

  Fly   905 KSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVL-LLSL 968
            |....:|::.:|.|.:||:|...::..|...:.|:|:.|.:.||.::..||  .|.|..| :||.
plant  1088 KFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFN--TNPKIFLFILST 1150

  Fly   969 TAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRI--KGLQD 1031
            .:||||:||:||:.::..|..|||.::.|||||.:|:||.:.|.||:.:...|:|:.|  |..|.
plant  1151 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQK 1215

  Fly  1032 KKLD 1035
            :.||
plant  1216 RVLD 1219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319 221/963 (23%)
DEXHc_TTF2 439..686 CDD:350830 78/265 (29%)
PIE1NP_187887.3 HSA 36..106 CDD:214727 13/48 (27%)
DEXQc_SRCAP 536..758 CDD:350761 78/265 (29%)
DISARM_DrmD_b 554..1488 CDD:468472 178/764 (23%)
SF2_C_SNF 1064..1199 CDD:350180 44/136 (32%)

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