DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and Ercc6l2

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001013626.2 Gene:Ercc6l2 / 76251 MGIID:1923501 Length:1537 Species:Mus musculus


Alignment Length:27 Identity:9/27 - (33%)
Similarity:14/27 - (51%) Gaps:6/27 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LLFCLIAT------CATQKVKGSPEVL 29
            :|.||||.      |..:.||.:.:|:
Mouse   188 ILLCLIAMWIICYFCIWKGVKSTGKVV 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319
DEXHc_TTF2 439..686 CDD:350830
Ercc6l2NP_001013626.2 Tudor_SF 17..72 CDD:470623
HepA <51..649 CDD:440319 9/27 (33%)
DEXHc_ERCC6L2 122..369 CDD:350763 9/27 (33%)
DEAH box 270..273
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 715..735
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 749..768
Atypical PIP-box. /evidence=ECO:0000250|UniProtKB:Q5T890 772..783
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 791..811
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 833..891
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 918..948
VIGSSK <1108..1131 CDD:464308
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1274..1306
Blue background indicates that the domain is not in the aligned region.

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