DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and Ino80

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_080850.2 Gene:Ino80 / 68142 MGIID:1915392 Length:1559 Species:Mus musculus


Alignment Length:1345 Identity:288/1345 - (21%)
Similarity:501/1345 - (37%) Gaps:408/1345 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NSEYYSDKEEDSVVNNSSL-----------GRSRKSSRLSKSSRLSKSS--RPSSA-GVVIDETQ 55
            |....||..||.:.:|:.|           .....:|.|.::|..|.|.  .|.|. ||:..|::
Mouse    43 NRNISSDDSEDGLDDNNPLLPESGDPLIQVKEEPPNSLLGETSGASSSGLLNPYSLNGVLQSESK 107

  Fly    56 SEEEESQS-SETAESEK-------SDESDNSQNSQESEDSEDDSVRPSARNTKRKPLGIPSDSED 112
            |::....: |:..:|.|       ||||  |:...:|||::|                     |:
Mouse   108 SDKGNLYNFSKLKKSRKWLKSILLSDES--SEADSQSEDNDD---------------------EE 149

  Fly   113 EEDELEQRALSPSTRMSITGVRPQDLSDDDSEIE----YSDEVQEGPTEAPTAEAVVPRYTTQFA 173
            ||..|.:..|....|:.......|:....|.|::    ||         |.......|.|..|  
Mouse   150 EELSLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYS---------AGLLSTYDPFYEQQ-- 203

  Fly   174 GNIQNDLHSTIGAADSEVLDDSSGSDVL-----------ILSNKETP------IEILSSTDDDAT 221
                   ...:|....:..:|......|           ..|::|:|      .::.:....||.
Mouse   204 -------RHLLGPKKKKFKEDKKLKAKLKKVKKKRRRDEEFSSEESPRHHHHQTKVFAKFSHDAP 261

  Fly   222 ---TNKENMSGPPF--------------ERPSKSLSPRSSAGASVVKTSKNLSQPTIQAVLK--- 266
               |.|:::|....              |.| |:...:|||....:..|:.|:...::.|.:   
Mouse   262 PPGTKKKHLSIEQLNARRRKVWLSIVKKELP-KANKQKSSARNLFLTNSRKLAHQCMKEVRRAAL 325

  Fly   267 ------QKTSPAAPR----------------RSRIKSEDQKVVSQVVYDEEMRKLAEKRVQVSDA 309
                  ::|.|.|.|                :...|..:::.:.|...|||||:...::.:::..
Mouse   326 QAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFL 390

  Fly   310 EKLFEKVAH---KLPDKG-----SQIMKRIDTLRRELAMDEQWISALRVQQ----SNVPAVRVVK 362
            ....|..||   :..|.|     .:|:::::....:..:|......:.:.|    ||....:.:|
Mouse   391 ITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALK 455

  Fly   363 PTLNPPRAPSIDTLDWDELSEAVNEIKPVYTGAQGMATFNNQKALTLESLKDLHVSLEDLPGPEV 427
            ...|........|..:||.::. :....:....:..:.|....:|...|::    :.||:|.|.:
Mouse   456 NAENAYHIHQARTRSFDEDAKE-SRAAALRAADKSGSGFGESYSLANPSIR----AGEDIPQPTI 515

  Fly   428 LAEDPVGLKVSLMNHQKHALAWMSWRERKLPRG--GILADDMGLGKTLTMISSVLACKNGQEMSE 490
                   ....|..:|   |..|:|......:|  |||||:||||||:..| ::||     .::|
Mouse   516 -------FNGKLKGYQ---LKGMNWLANLYEQGINGILADEMGLGKTVQSI-ALLA-----HLAE 564

  Fly   491 GKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVC 555
                             |:::  |          |..|::.|||.|..|..|....|  .|..|.
Mouse   565 -----------------RENI--W----------GPFLIISPASTLNNWHQEFTRFV--PKFKVL 598

  Fly   556 VHHGNNRE---------TKGKYLRD--YDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVR 609
            .:.||..:         .|..|.:|  :.:|:|:||:|.::.|....   |||:.::||||..::
Mouse   599 PYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQR---VKWQYMVLDEAQALK 660

  Fly   610 NHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWI--------DN 666
            :..|.....:...:.:.|..||||||||...:::|||.|:..:.||....:.:|.        :|
Mouse   661 SSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAEN 725

  Fly   667 KSAGGQN---RLNLLMKSLMLRRTK----------------AQLQSDGKL--NSLPNK----ELR 706
            |||..:|   ||::::|..||||.|                .||.|..||  .:|.||    :|.
Mouse   726 KSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLL 790

  Fly   707 LIEISLDKEEMNVYQTVMTYSRTLFAQF--------LHQRAERETDFN------------YRSDA 751
            ...:...::..|...::|    .|..||        |.:|.|..:.|:            ||...
Mouse   791 QSSMGSTQQAQNTTSSLM----NLVMQFRKVCNHPELFERQETWSPFHISLKPYEISKFIYRHGQ 851

  Fly   752 NKPTYNQIKD-----------PN------------------------------------------ 763
            .: .:|..:|           |:                                          
Mouse   852 IR-VFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGINEGSCFSFLRFIDVSPAEMANLMLQGLLAR 915

  Fly   764 --------GAYYKMHE--KFARMAGSKKE--VKSHDILV---LLLRLRQICCHPGLIDAMLDGEE 813
                    .|.|::|:  .:|...|:..:  :::.|.|:   ..|....:|..| |:.:::....
Mouse   916 WLALFLSLKASYRLHQLRSWAEPDGTSHQSYLRNKDFLLGVDFPLSFPNLCSCP-LLKSLVFSSH 979

  Fly   814 SQTMGDHSSD-----------------SDTPEIDLLAQLNKLAI------TDTSTDGQQSVANAG 855
            .:.:..:|..                 ::.|....:|.....|:      .|.|.:.::.|...|
Mouse   980 CKAVSGYSDHVVHQRRSATSSLRCCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERGVLKEG 1044

  Fly   856 D---------DGPPLLPDEARIAKASKNLLKRS----NPVFNL--HRPSSKINMV---------- 895
            .         :|.|.|        |:..|.:||    .|...|  .||.:..:.:          
Mouse  1045 GSLAAKQCLLNGAPEL--------ATDWLSRRSQFFPEPAGGLLSIRPQNGWSFIRIPGKESLIT 1101

  Fly   896 -------IQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNE 953
                   :.:|.|. |||...:.::.||.|.::|:|.:::.......:.|:|:..:..|:|:|.:
Mouse  1102 DSGKLYALDVLLTR-LKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVAD 1165

  Fly   954 FNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMC 1018
            |..||: ..|.|||..|||:|:||..|:.::..|..|||.::.||.||.:|:||.|.|.:|:.:|
Mouse  1166 FQTRND-IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLIC 1229

  Fly  1019 VDTVEQRIKGLQDKKLDLADGVLTGA---------KVSSKLTIDD 1054
            ..|:|:||.....:|.::...|::|.         |....|.:||
Mouse  1230 KGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDD 1274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319 212/954 (22%)
DEXHc_TTF2 439..686 CDD:350830 79/270 (29%)
Ino80NP_080850.2 Assembles INO80 complex module with putative regulatory components INO80E, INO80F, UCHL5, NFRKB, MCRS1 and IN80D. /evidence=ECO:0000250|UniProtKB:Q9ULG1 1..268 54/265 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 46..88 9/41 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..250 5/36 (14%)
Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1. /evidence=ECO:0000250|UniProtKB:Q9ULG1 214..528 55/329 (17%)
HepA 300..>832 CDD:440319 137/590 (23%)
DEXQc_INO80 520..748 CDD:350760 79/270 (29%)
Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2. /evidence=ECO:0000250|UniProtKB:Q9ULG1 523..1559 189/811 (23%)
SF2_C_SNF 1093..1228 CDD:350180 43/136 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1285..1319
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1391..1464
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1504..1559
Blue background indicates that the domain is not in the aligned region.

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