DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and Rad54b

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001034645.1 Gene:Rad54b / 623474 MGIID:3605986 Length:886 Species:Mus musculus


Alignment Length:615 Identity:152/615 - (24%)
Similarity:261/615 - (42%) Gaps:137/615 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   460 GGILADDMGLGKTLTMISSV--LACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDT 522
            |.||||:|||||||..||.:  |.|:...                          |.|...:|  
Mouse   299 GAILADEMGLGKTLQCISLIWTLQCQGPY--------------------------GGKPVIKK-- 335

  Fly   523 RRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHK 587
                ||:|.|.||:..|..|.:..:..:::.:.....:::..:......:.:::.:|:::.|   
Mouse   336 ----TLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDQDHKVEEFINSTFHSVLIISYEMLLR--- 393

  Fly   588 SLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCS 652
            ||..:..:.:..:|.||.|.::|...:::.|:..|..:....|||||:||...:.:||:.|:...
Mouse   394 SLDQIKTIPFGLLICDEGHRLKNSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPG 458

  Fly   653 PFDDLHTWKKWIDNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEM 717
            ....|.:::|              :..:.:::.|                      |.|..|||.
Mouse   459 ILGSLSSYRK--------------IYEEPIIISR----------------------EPSSSKEER 487

  Fly   718 NVYQTVMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKD-----PNGAYYKMHEKFARMA 777
            .:.:...|....|..:|:.:|.:..        .||....:|::     |.....:::.|..|..
Mouse   488 ELGERRATELTRLTGRFILRRTQEV--------INKYLPPKIENVVFCRPGALQIELYRKLLRSQ 544

  Fly   778 GSK------KEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMGDHSSDSDTPEIDLLAQLN 836
            ..:      .|..:|  |:.:..|:::|.||.|:.:.:.|:|      .||..:..|...|.|  
Mouse   545 SVRFCLQGLLENSAH--LICIGALKKLCNHPCLLFSSVKGKE------FSSSCEENEERNLCQ-- 599

  Fly   837 KLAITDTSTDGQQSVANAGDDGPPLLPDEARIAKASKNLLKRSNPVFNLHRPSSKINMVIQILKT 901
                      |..||..||                       .||:......|.|:.:::::|..
Mouse   600 ----------GLLSVFPAG-----------------------YNPLQFSEEESGKLQVLVKLLAV 631

  Fly   902 SILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLL 966
            .......:|.|:||.:...|::|.:...:.|.|...|:|..||..||.||:.||.:.:...:.||
Mouse   632 IHELRPTEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLL 696

  Fly   967 SLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQD 1031
            |..||||||||||.:||:|.|:.|||..:.||..|::|.|||..|.||:.:...|:|::|...|.
Mouse   697 SSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQI 761

  Fly  1032 KKLDLADGV--LTGAKVSSKLTIDDLKGLF 1059
            .|..|:..|  ||.:....:.::::||.||
Mouse   762 SKQGLSGAVVDLTRSSEHIQFSVEELKNLF 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319 146/595 (25%)
DEXHc_TTF2 439..686 CDD:350830 50/227 (22%)
Rad54bNP_001034645.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..95
HepA <274..772 CDD:440319 146/594 (25%)
DEXHc_RAD54B 274..508 CDD:350824 59/279 (21%)
DEGH box 409..412 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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