Protein Alignment lds and smarca1

DIOPT Version :10

• Sequence 1: NP_524850.2
• Gene: lds / 45894
• FlyBaseID: FBgn0002542
• Length: 1061
• Species: Drosophila melanogaster
• Sequence 2: NP_001093467.1
• Gene: smarca1 / 559803
• ZFINID: ZDB-GENE-070705-296
• Length: 1036
• Species: Danio rerio
• Alignment Length: 677
• Identity: 171/677 - (25%)
• Similarity: 285/677 - (42%)
• Gaps: 178/677 - (26%)

  Fly   396 QGMATFNNQKALTLESLKDLHVSLEDLPGPEVLA---EDPVGLK-VSLMNHQKHALAWM-SWRER 455
            |.:.:..:.:....|..:|..:..|......||.   |.|..:| .:|.::|...|.|| |..|.
Zfish    96 QNLLSVGDNRHRRTEQEEDEELLSESRKADNVLVRFEESPSYIKNGTLRDYQIRGLNWMISLYEN 160

  Fly   456 KLPRGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRK 520
            .:  .|||||:|||||||..|:.:...|:.:.:.
Zfish   161 GI--NGILADEMGLGKTLQTIALLGYLKHYRNIP------------------------------- 192

  Fly   521 DTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRD------YDIVVTTY 579
                |..:|:.|.|.|..|.:|.:..|...| .||:.  .|::.:..::||      :|:.||:|
Zfish   193 ----GPHMVLVPKSTLHNWMNEFKRWVPTLK-AVCLI--GNKDERAAFIRDVMMPGEWDVCVTSY 250

  Fly   580 QIVAREHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYA 644
            ::|.|| ||:...|  .||.:::||||.::|.||:.|....:.:...|..|||||:||...::::
Zfish   251 EMVIRE-KSVFKKF--NWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWS 312

  Fly   645 LLKFLRCSPFDDLHTWKKWIDNKSAGGQ---NRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELR 706
            ||.||....|:....:..|.|....|.|   .||:.:::..:|||.||:::     .|||
Zfish   313 LLNFLLPDVFNSASDFDSWFDTNCLGDQKLVERLHAVLRPFLLRRIKAEVE-----KSLP----- 367

  Fly   707 LIEISLDKEEMNVYQTVMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHE 771
                  .|:|:.:|..:....|..:.:.|                       :||.:
Zfish   368 ------PKKEVKIYLGLSKMQREWYTRIL-----------------------MKDID-------- 395

  Fly   772 KFARMAGSKKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMGDHSSDSDTPEIDLLAQLN 836
             ....||...:::   :|.:|::||:.|.||.|.|
Zfish   396 -ILNSAGKMDKMR---LLNILMQLRKCCNHPYLFD------------------------------ 426

  Fly   837 KLAITDTSTDGQQSVANAGDDGPPLLPDEARIAKASKNLLKRSNPVFNLHRPSSKINMVIQILKT 901
                             ..:.|||...|        .:|:..|..:..|.:...|:
Zfish   427 -----------------GAEPGPPYTTD--------THLVINSGKMVALDKLLPKV--------- 457

  Fly   902 SILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLL 966
               :....:.::.||.|.|||||.|:....|.....|:|..|.:.|:..::.||..|:.|.:.:|
Zfish   458 ---QEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFML 519

  Fly   967 SLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQD 1031
            |..|||:|:||..|:.::|.|..||||::.||.||.:|:||:|.|.:::.:..:|||:||....:
Zfish   520 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAE 584

  Fly  1032 KKLDLADGVLTGAKV---SSKLTIDDL 1055
            .||.|...|:...::   .:||..|::
Zfish   585 MKLRLDSIVIQQGRLIDQQNKLGKDEM 611

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lds	NP_524850.2	HepA	287..1041	CDD:440319	167/658 (25%)
		DEXHc_TTF2	439..686	CDD:350830	75/256 (29%)
smarca1	NP_001093467.1	PLN03142	54..1033	CDD:215601	171/677 (25%)