DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and ercc6

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001361595.1 Gene:ercc6 / 548810 XenbaseID:XB-GENE-1007918 Length:1371 Species:Xenopus tropicalis


Alignment Length:69 Identity:17/69 - (24%)
Similarity:27/69 - (39%) Gaps:13/69 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 CLIATCATQKVKGSPEVLPAAMYDGE---------LSHESVNKISAQLLNALSELEALQEGNQQL 67
            |:|.:|..::....||    |..:||         :|..:|......:..||.:.|...||...:
 Frog   203 CVIWSCFGKRDTDKPE----ANGEGEALVKPEETDISAAAVQPEGTDISEALEQPEETGEGEALV 263

  Fly    68 KMAE 71
            |..|
 Frog   264 KPEE 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319
DEXHc_TTF2 439..686 CDD:350830
ercc6NP_001361595.1 COG4913 <24..>206 CDD:443941 1/2 (50%)
cc_ERCC-6_N 61..137 CDD:411064
HepA <458..948 CDD:440319
CSB_WHD 1300..1371 CDD:439329
Blue background indicates that the domain is not in the aligned region.

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