DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lds and dom

DIOPT Version :9

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001286676.1 Gene:dom / 45655 FlyBaseID:FBgn0020306 Length:3233 Species:Drosophila melanogaster


Alignment Length:1386 Identity:273/1386 - (19%)
Similarity:480/1386 - (34%) Gaps:526/1386 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SKSSRLSKSSRPSSAGVVIDETQSEEE---ESQSSETAESEKSDESDNSQNSQESEDSEDDSVRP 94
            :|.....|.:.......::|:|:...:   |..:...|::...:.|..:...:||    ||..||
  Fly   637 TKIEEKRKQALDQHLSFIVDQTEKFSQQLVEGMNKSVADTPSLNSSRLTSPKRES----DDDFRP 697

  Fly    95 SARNTKRKPLGIPSDSEDEEDEL---EQRALSPSTRMSITGVRPQDLSDDDSEIEYSDEVQEGPT 156
            .            |.|||:|:.:   |:.|  ...:..:|.:.      .:||:::.|.:.:.| 
  Fly   698 E------------SGSEDDEETIAKAEEDA--ADVKEEVTALA------KESEMDFDDFLNDLP- 741

  Fly   157 EAPTAEAVVPRYTTQFAGNIQNDLHSTIGAADSEVLDDSSGSDVLILSNKETPIEILSSTDDDAT 221
                     |.|.......::.:..|.|   .:|..|||..|:   ...||      :|.||:.|
  Fly   742 ---------PGYLENRDKLMKEEQSSAI---KTETPDDSDDSE---FEAKE------ASDDDENT 785

  Fly   222 TNKENMSGPPFERPSKSLSPRSSAGASVVKTSKNLSQPTIQAVLKQKTSPAAPRRSRIKSEDQKV 286
            .:|:       |...:.:..:..  ...::...:||...:.|..|.: .|.:|:|          
  Fly   786 ISKQ-------EEAEQEIDHKKE--IDELEADNDLSVEQLLAKYKSE-QPPSPKR---------- 830

  Fly   287 VSQVVYDEEMRKLAEKRVQV-SDAEKLFEKVAHKLPDKGSQIMKRIDTLRRELAMDEQWISALRV 350
                      ||||.:..:: ||.:........:..|..::..:.:.|::.:..|:||     ..
  Fly   831 ----------RKLAPRDPELDSDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQ-----DE 880

  Fly   351 QQSNVPAVRVVKPTLNPPRAPSIDTLDWDELSEAVNEIKPVYTGAQGMATFN-----NQKALTLE 410
            |:..:.::..                |.|..|.|..      :|:...|:.|     |..|...|
  Fly   881 QEDGLKSLMA----------------DADATSGAAG------SGSTAGASGNKDDMLNDAAALAE 923

  Fly   411 SLKDLHVSLEDLPGPEVLAEDPVGLKVSLMNHQKHALAWM-SWRERKLPRGGILADDMGLGKTLT 474
            ||:.   ....|....|:...|..||.||..:|...|.|: :..||||  .|||||:||||||:.
  Fly   924 SLQP---KGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLVTMNERKL--NGILADEMGLGKTIQ 983

  Fly   475 MISSV--LACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLR 537
            .|:.:  |||..|                           .|          |..|:|.|:|::.
  Fly   984 TIALLAHLACAKG---------------------------NW----------GPHLIVVPSSVML 1011

  Fly   538 QWESEVESKVSRQKLTVCVHHGNNRETKGKYL-----RDYDIVVTTYQIVAREHKSLSAVFGVKW 597
            .||.|.:......|  :..::|:.:|.|.|.:     ..:.:.:|:|::|.::.:|...   .||
  Fly  1012 NWEMEFKKWCPGFK--ILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRR---KKW 1071

  Fly   598 RRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKK 662
            :.:|||||..::|.|||....:.:...:.|..|||||:||..:::::|:.||....|.....:|:
  Fly  1072 KYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKE 1136

  Fly   663 WIDNKSAG---GQ--------NRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEE 716
            |..|...|   |.        .||:.:::..:|||.|.:::     ..:|.|...:|...|...:
  Fly  1137 WFSNPMTGMIEGNMEYNETLITRLHKVIRPFLLRRLKKEVE-----KQMPKKYEHVITCRLSNRQ 1196

  Fly   717 MNVYQTVMTYSRTL--------------------------------------------------- 730
            ..:|:..|:.::|.                                                   
  Fly  1197 RYLYEDFMSRAKTRETLQTGNLLSVINVLMQLRKVCNHPNMFEARPTISPFQMDGITFHTPRLVC 1261

  Fly   731 -------FAQ---------FLHQRAERETDFNYRSDANKPTYNQIKD-----------PNGAY-Y 767
                   |.|         .||.........:::|....|....|:|           |||.| :
  Fly  1262 DIMEYDPFTQINLETLNLLLLHLEQTMTAYVSHKSRLLAPPRKLIEDIDTAPLPAPRCPNGKYRF 1326

  Fly   768 KMHEKFARMA----------GSKKEVKSHDILVLLLR--------LRQI---------CCHPGLI 805
            .:..:.|.:|          |:...::.....::.:|        |:::         ...|.:|
  Fly  1327 HIRVRSAELAQRIKLNAVKVGASPAMRLEGSKIMPMRNLLPSGRVLKRVSASINPVNMALKPVVI 1391

  Fly   806 DAMLDGEESQTMGDHSSDSDTPEIDLL---------AQLN------------------------- 836
            ::::....|.|    ::.|.|..:.:|         :|:|                         
  Fly  1392 NSVVTTTSSST----TASSPTGALSVLSNSKLLGARSQINAPTPAKVAKTMQDGKPFFYLTPATN 1452

  Fly   837 -----------------------KLAITDTSTDGQ---------------------QSVAN---- 853
                                   :..:|.::|.||                     ||:||    
  Fly  1453 SGAAGARLTLTSKTTASASTTTSRTTVTASTTSGQQLIRDPIVKDLATHVKSTVQKQSIANGKTE 1517

  Fly   854 ------AGD------------------------------DGPPLLPDEARIA-----KASKNLLK 877
                  |.|                              |..|:..::.|.|     :|::: ||
  Fly  1518 PEEETEAEDPYKVQELIQMRKEQRLAALKRMAMINRRRTDATPIYGEDCREAIQRCMQATRS-LK 1581

  Fly   878 RS------------------------------------NPVFN---LHRPS-------------- 889
            ||                                    .|||.   ::.||              
  Fly  1582 RSTWQTRGYANCCTAMAHRNGWSLNHLLKSFEERCADLKPVFANFVIYVPSVCAPRIRRYVQNLS 1646

  Fly   890 -------SKI-NMVIQILKTSI------------------------------------LKSSDDK 910
                   .:| |:|.|.|:..:                                    ||.:..:
  Fly  1647 STHWQHEQRIENIVDQALRPKLALLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHR 1711

  Fly   911 AIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRV--LLLSLTAGGV 973
            .::.:|.|.:||:|...|:..|...|.|:|:..|:.||.::..|   |..||:  .:||..:|||
  Fly  1712 VLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERF---NGDKRIFCFILSTRSGGV 1773

  Fly   974 GLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLAD 1038
            |:||.||:.::..|..|||.::||||||.:|:||.::|.||:.:...|:|..|....::|..|:|
  Fly  1774 GINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSD 1838

  Fly  1039 GVLTGAKVSS----KLTIDDL 1055
            ..:.|...::    ..||.||
  Fly  1839 MAIEGGNFTTTYFKSSTIKDL 1859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 SNF2_N 442..805 CDD:278600 100/487 (21%)
DEXDc 459..634 CDD:238005 49/181 (27%)
HELICc 885..1014 CDD:238034 50/188 (27%)
domNP_001286676.1 HSA 543..614 CDD:214727
ASF1_hist_chap <674..831 CDD:304562 44/232 (19%)
FAM176 <824..>868 CDD:291517 10/63 (16%)
SNF2_N 952..1238 CDD:278600 82/334 (25%)
DEXDc 969..1108 CDD:238005 49/180 (27%)
Helicase_C 1692..1806 CDD:278689 40/116 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467173
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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