DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lds and XNP

DIOPT Version :9

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster


Alignment Length:1256 Identity:278/1256 - (22%)
Similarity:460/1256 - (36%) Gaps:397/1256 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EDSVVNNSSLGRSRKSSRLSKSSRLSKSSRPSSAGVVIDETQSEEEES-QSSETAESEKSDESDN 77
            :||  |:||:.| |:|:..|||:..|:||.|.|     :..||...:: ::|..|....|.:||.
  Fly    20 DDS--NSSSVSR-RESATESKSASESESSPPRS-----NTKQSRTHKNVKASGKATVSSSSDSDQ 76

  Fly    78 SQNSQESEDSEDDSV-------------------RPSARNTKRKPLGIPSDSEDEEDELEQRALS 123
            :..:..:.|.|.:.|                   ||| |.:::|.:.| :||.|||.....:.:.
  Fly    77 AVANSSANDEEKEPVCKIRIVPLEKLLASPKTKERPS-RGSQQKNVTI-NDSSDEEPLKGSKLVL 139

  Fly   124 PSTRMSITGVRPQDLSDDDSEIEYSDEVQEG-------PTEA-----------PTAEAVVPRY-- 168
            |:.:.........:|||.    |..||.:|.       |.||           .:.|::..|.  
  Fly   140 PARKSRNKNASIIELSDS----EEVDEEEESLLVAIPLPKEAQQTKPEKNSSKASKESIEKRQKA 200

  Fly   169 ----TTQFAGNIQNDLHSTIGAADSEVLDDSSGS----------------DVLILSNK--ETPIE 211
                ||..|..|::...:..|:..||....:|.|                .|.:...|  :.|.:
  Fly   201 QKEATTSSARAIRSVNGTRRGSLSSERSSRASSSRAESPPRPKRCVVRLKRVSLPKTKPAQKPKK 265

  Fly   212 ILSSTDDDATTNKENMSGPPFERPSKSLSPRSS----AGASVVKTSKNLSQPTIQAVLKQKTSPA 272
            :.|.:::.|||:|::.     :|.|||.|...|    ..|...:..:..|....:.......|..
  Fly   266 MSSDSEEAATTSKKSR-----QRRSKSESEADSDYEAPAAEEEEEEERKSSGDEEEAANSSDSEV 325

  Fly   273 AP--RRSRIKSEDQKVVSQVVYDEEMRKLAEKRV-QVSDAEKLFEKVAHKLPDKGSQIMKRI--- 331
            .|  :|.|.|||..|..|....:|:.:|...||: :.|..|...:....|..:|...|.|.|   
  Fly   326 MPQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDGDGDDDKQKNKRKHIRKIIKTK 390

  Fly   332 --DTLRRELAMDEQWISALRVQQSNVPAVRVVKPTLNPPRAPSIDTLDWDELSEAVNEIKPVYTG 394
              |...:|.|.:|                                    |:..:.:.:.:.:|  
  Fly   391 DLDLTTKEAAKEE------------------------------------DDRRKRIEDRQKLY-- 417

  Fly   395 AQGMATFNNQKALTLESLKDLHVSLE-DLPGPEVLAEDPVGLKVSLMNHQKHALAWMSW------ 452
                    |:..:..||::...:.|: |....:.|.:...||...|..||...:.:| |      
  Fly   418 --------NRIFVKSESVEINELVLDFDEESKKALLQVDKGLLKKLKPHQVAGVKFM-WDACFET 473

  Fly   453 ---RERKLPRGGILADDMGLGKTL---TMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSV 511
               .:.|...|.|||..|||||||   |:..::|.                              
  Fly   474 LKESQEKPGSGCILAHCMGLGKTLQVVTLSHTLLV------------------------------ 508

  Fly   512 TGWKSKGRKDTRRGG---TLVVCPASLLRQWESEVES-------------KVSRQKLTVCVHHGN 560
                     :|||.|   .|::.|.|.:..|..|..|             .:||.|         
  Fly   509 ---------NTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYK--------- 555

  Fly   561 NRETK-----------GKYLRDYDIVVTTYQIVAREHKSLSAVFGVKWRR--------------- 599
            ::.|:           |..:..||:    |:|:|.|...     |::.::               
  Fly   556 DKPTRIFKLNEWFNEGGVCILGYDM----YRILANEKAK-----GLRKKQREQLMQALVDPGPDL 611

  Fly   600 IILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWI 664
            ::.||.|:::|.|:..|.||..:|.|.|..|||||:||...:.|.:::|::.:.   |.|:|:::
  Fly   612 VVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNL---LGTYKEYM 673

  Fly   665 D---NKSAGGQ----------------NRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEI 710
            :   |....||                :.|:.|::..:.||..:.|..     .||.|...::..
  Fly   674 NRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAP-----YLPPKHEYVVYT 733

  Fly   711 SLDKEEMNVYQTVMTYSR------------TLFAQFLHQRAERETDFNYR--SD---ANKPTYNQ 758
            :|.:.:..:|...||..|            .||..|...|.......|.|  ||   |.:...|.
  Fly   734 TLSELQQKLYGYYMTTHREQSGGDVVGKGARLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSND 798

  Fly   759 IKDPNG-------------------AYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGL 804
            ..|..|                   ..:|.....:.:|.|..:||...                 
  Fly   799 DSDMEGFICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRK----------------- 846

  Fly   805 IDAMLDGEESQTMGDHSSDSDTPEIDLLAQLNKLAITDTSTDGQQSVANAGDDGPPLLPDE---A 866
                   ..:...|...||||   :::|..|.          |..||..  ||     |.|   .
  Fly   847 -------TRNGNAGGGDSDSD---LEMLGGLG----------GGSSVQK--DD-----PSEWWKP 884

  Fly   867 RIAKASKNLLKRSNPVFNLHRPSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLS-- 929
            .:.:...|         |:|. |.|:.:::::|:.  .::..||.:|.||....||::...||  
  Fly   885 FVEERELN---------NVHH-SPKLLILLRLLQQ--CEAIGDKLLVFSQSLQSLDVIEHFLSLV 937

  Fly   930 --------------------KDGVATLSLNGTIPVKNRQDIVNEFNDRNN-QKRVLLLSLTAGGV 973
                                ..|.....|:|:..|:.|:.:..:||:..| :.|:.|:|..|||:
  Fly   938 DSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGL 1002

  Fly   974 GLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLAD 1038
            |:||:.||.:::.|:.|||..:.|:..|:||.||.|...||:.:.:.|:||::...|..|...|.
  Fly  1003 GINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAK 1067

  Fly  1039 GVLTGAKVSSKLTIDDLKGLF 1059
            .|:...::|......||..|:
  Fly  1068 RVIDEQQISRHYNQTDLMELY 1088

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 SNF2_N 442..805 CDD:278600 96/471 (20%)
DEXDc 459..634 CDD:238005 49/219 (22%)
HELICc 885..1014 CDD:238034 43/151 (28%)
XNPNP_651398.1 DTHCT 258..335 CDD:285332 19/81 (23%)
SNF2_N 458..779 CDD:278600 83/386 (22%)
DEXDc 483..646 CDD:238005 49/219 (22%)
Helicase_C 913..1035 CDD:278689 36/121 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467225
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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