DRSC/TRiP Functional Genomics Resources

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Protein Alignment lds and Ercc6l2

DIOPT Version :10

Sequence 1:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster
Sequence 2:XP_038952187.1 Gene:Ercc6l2 / 361197 RGDID:1561537 Length:1561 Species:Rattus norvegicus


Alignment Length:791 Identity:197/791 - (24%)
Similarity:319/791 - (40%) Gaps:215/791 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   356 PAVRVVKPTLNPPR--APSIDTLDWDELSEAVNEIKPVYTGAQGMATFNNQKALTLE------SL 412
            |..|.:.|:|:..:  ..||.::..||..|....:  :|...|       :|.:.|:      |.
  Rat    19 PGERCLAPSLDNKKLCEASIKSITVDENGEPFAVV--LYPDFQ-------EKKIPLQRLQEVKST 74

  Fly   413 KDLHVSL----EDLPGPEV-------------LAED----PVGLKVSLMNHQKHALAWMSWRERK 456
            ||...||    |||..|..             |:||    |..:...|.::|:....:: :|...
  Rat    75 KDHSRSLIFDDEDLEKPYFPDQKIPSLVSAFQLSEDGDSIPYTINRYLRDYQREGAQFL-YRHYI 138

  Fly   457 LPRGGILADDMGLGKTLTMISSVLAC--KNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGR 519
            ..||.||.||||||||:.:||.:.|.  |.|..             ||.:|...:.:.....|..
  Rat   139 KGRGCILGDDMGLGKTIQVISFLAAVLHKKGTR-------------EDIENNMPEFLLKSMKKES 190

  Fly   520 KDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYL--RDYDIVVTTYQIV 582
            ..|.|...|:|.|.|:|..|:.|::   :.....|.|.||:.::.:...|  |..:|.:|||:.:
  Rat   191 SSTARKMFLIVAPLSVLYNWKDELD---TWGYFRVTVLHGSKKDNELTRLKQRKCEIALTTYETL 252

  Fly   583 AREHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLK 647
               ...|..:..::|..||:||||.:||..::.:..:..::.|.|..||||.:||...:::.::.
  Rat   253 ---RLCLEELNSLEWSAIIVDEAHRIRNPNARVTEVMKAVKCKVRIGLTGTILQNNMKELWCVMD 314

  Fly   648 FLRCSPFDDLHTWKKWIDNKSAGGQ----------------NRLNLLMKSLMLRRTKAQLQSDGK 696
            :...........:||...:....||                :||...|....|||||..::    
  Rat   315 WAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGYFLRRTKTLIK---- 375

  Fly   697 LNSLPNKELRLIEISLDKEEMNVYQTVMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKD 761
             ..||.||.|::..||...:..|||||:                 ||:                 
  Rat   376 -GQLPKKEDRMVYSSLTDFQKAVYQTVL-----------------ETE----------------- 405

  Fly   762 PNGAYYKMHEKFARMAGSKKEVKSHDILVLLL----------RLRQICCHPGLIDAMLDGEESQT 816
                                     |:.::|.          :.|:.||:               
  Rat   406 -------------------------DVALILTSSQPCTCGSGQKRRKCCY--------------- 430

  Fly   817 MGDHSSDSDTPEIDLLAQLNKLAITDTSTDGQQSVANAGDDGPPLLPDEARIAKASKNLLKR-SN 880
              ..:|..||.....|:.|..|          |.|||     ...|...|..:|..:.|:|| .:
  Rat   431 --KTNSQGDTVRTLCLSYLTVL----------QKVAN-----HVALLQAASTSKHQETLIKRICD 478

  Fly   881 PVFN----------------LHRP--SSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDH 927
            .||:                |..|  |.|:.::.|:|  :..:...||.::.|..|.:||:|:.:
  Rat   479 QVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLDQLL--NHFRKHRDKVLLFSFSTKLLDVLQQY 541

  Fly   928 LSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNP 992
            ....|:....|:|:...:.|..||.|||. :....:.|:|..|||:|||.||||.::|.|..|||
  Rat   542 CMASGLDYRRLDGSTKSEERLKIVKEFNS-SQDVNICLVSTMAGGLGLNFIGANVVILFDPTWNP 605

  Fly   993 QLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAKVSSKLTIDDLKG 1057
            ..:.||.||.||:||.::|.:::.:.:.|||:.:...|..|..| ..|:.|:: ::|...:.::|
  Rat   606 ANDLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQL-HCVVVGSE-NAKRYFEAVQG 668

  Fly  1058 -------LFGM 1061
                   |||:
  Rat   669 SKEHRGELFGV 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ldsNP_524850.2 HepA 287..1041 CDD:440319 190/762 (25%)
DEXHc_TTF2 439..686 CDD:350830 69/266 (26%)
Ercc6l2XP_038952187.1 Tudor_SF 17..72 CDD:470623 13/61 (21%)
HepA <47..649 CDD:440319 181/729 (25%)
DEXHc_ERCC6L2 122..369 CDD:350763 69/266 (26%)
VIGSSK <1132..1155 CDD:464308
Blue background indicates that the domain is not in the aligned region.

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