DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment lds and F19B2.5

DIOPT Version :9

Sequence 1:	NP_524850.2	Gene:	lds / 45894	FlyBaseID:	FBgn0002542	Length:	1061	Species:	Drosophila melanogaster
Sequence 2:	NP_001366639.1	Gene:	F19B2.5 / 180319	WormBaseID:	WBGene00008944	Length:	144	Species:	Caenorhabditis elegans

Alignment Length:	157	Identity:	38/157 - (24%)
Similarity:	64/157 - (40%)	Gaps:	31/157 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly   569 LRDYDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGT 633
            |..:.:||||:..: :...:...:..:.:.|||:.:|:.:.|..:|...|:..|...|||.|||.
Worm    10 LAKHSVVVTTFDTI-KTLMNFQTLQKISFERIIIYDAYPIDNTDTQRYKALRQLDATYRWVLTGN 73

  Fly   634 PIQNKELDVYALLKFLRCSPFDDLHTWK---------KWIDNKSAGGQNRLNLLMKSLMLRRTKA 689
            .:|..      |..||:...:.|...|.         |..|.|:...:...||| ||:.|:
Worm    74 LLQQN------LANFLKLGEYGDDQLWDTQICPILEGKQCDEKTELSKKIENLL-KSVELK---- 127

  Fly   690 QLQSDGKLNSLPNKELRLIEISLDKEE 716
                      .|.:..|.:|:..|..:
Worm   128 ----------FPLENYREMEVGADDSQ 144

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lds	NP_524850.2	SNF2_N	442..805	CDD:278600	38/157 (24%)
		DEXDc	459..634	CDD:238005	19/64 (30%)
		HELICc	885..1014	CDD:238034
F19B2.5	NP_001366639.1	DEAD-like_helicase_N	<2..127	CDD:421690	33/124 (27%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S3486
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.860