DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kar and CG12866

DIOPT Version :9

Sequence 1:NP_001189213.1 Gene:kar / 45883 FlyBaseID:FBgn0001296 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001286425.1 Gene:CG12866 / 36630 FlyBaseID:FBgn0033955 Length:859 Species:Drosophila melanogaster


Alignment Length:585 Identity:120/585 - (20%)
Similarity:193/585 - (32%) Gaps:211/585 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 PPDGGARAWLVMVSAFLCNGIIFGFINTYGVIHSLLTDRLTKLGDPEASSKAALIGALAIGTTFL 137
            |||||. .|::||.:||...||.|.|.|.||:...:...|    |...|| .:.:.::.||..|.
  Fly   298 PPDGGF-GWVIMVLSFLAQLIIDGLIFTIGVLLPSIAQDL----DVSISS-VSFVASVQIGCYFT 356

  Fly   138 FSTMAGCLTDKIGLRLTTFAGGVLSAGGLLLSSFCTENIGALYFTYGIMF---GLGAALAYTPTL 199
            ....:..|.::.|.|....||.:.||..:|.||: :.::..|.|.|.::.   |:..::.:..:.
  Fly   357 SGAFSAVLINRFGFRKVAIAGVLCSAVSILASSW-SVSLTMLIFFYSVLACAGGITLSMIWASSQ 420

  Fly   200 AILGHYFKRYLGKVSGFVTAGSSVFTVILPPCLDKLLGSYGLEGTLRIMSLVSAFIILCSFVYKP 264
            .|:|:||:||....:||..:|.....|:.......|:...|....||..:.:...|:|....|..
  Fly   421 LIVGYYFERYRPMANGFSCSGGGAGIVLFTFLNSWLVPIIGWRNMLRTQAGLIMLILLMVVAYVE 485

  Fly   265 LHPPP-------------------------------------------EPPKKKPGRSRI----- 281
            :.|..                                           ||..||.|.::.     
  Fly   486 VAPTQVGMYHLPGSSDTSSDEYYGNFYVHDYLRQSAMTAKSRSILSTYEPRPKKKGCAKFCPSCS 550

  Fly   282 ----------------NLFLR-------------------------------------------- 286
                            ||.:|                                            
  Fly   551 NCCWRRRKKSQNADEQNLLIRPAPLEREDLFYTGPAEYEKPHSKENVDGKEFLLMGSDKNTQQVN 615

  Fly   287 -SIINVEI---------------WKR---------------------------KRFVIWALCVPL 308
             .|.|:.:               |..                           |:|....|....
  Fly   616 YGIKNIRVDDEPDRISRVHRERRWSNENQKKQNSCRNSRFMLTVLKLFDYRLLKQFEFKILVASA 680

  Fly   309 ALF--GYFVPYVHMMQFVKTTFPGEDVNLPVMCIGITSGIGRLIFGVIADMPGVNRMYLQQ---L 368
            .||  |:.:|:|:  ...:||.|.|...:....|||::.:.|.|.|::|        |.::   |
  Fly   681 FLFPMGFNIPFVY--SSARTTIPVEYARMIGPIIGISNLVMRNILGILA--------YKRRSWTL 735

  Fly   369 SLVSIGLVTLLLPLTNSYVILVS---------FTLVMG----LFDGCFISLLGPIAYEICGPSGA 420
            .|...||:      .....:|:|         |..:.|    :....:.:|.|.|..:..|.|..
  Fly   736 GLCGCGLI------FGGVSVLISAFYGENLIWFQFLYGFSYAVAPAVYSTLRGLIYVKYLGLSKL 794

  Fly   421 TQAIG---FLLGLSSIPLTVGPPVAGMIFDSTNSYT-------LPLILAGLPPLLGSSLLFLIKC 475
            |.|.|   ..:|:.:.   :|..:||.:...|.:|:       |.||::|...||   |..||||
  Fly   795 TNAFGITSLAMGMGAF---IGTTIAGKLIGITGNYSAAFCFAGLCLIVSGFLKLL---LPLLIKC 853

  Fly   476  475
              Fly   854  853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
karNP_001189213.1 MFS 81..459 CDD:119392 107/559 (19%)
MFS_1 124..439 CDD:284993 83/489 (17%)
CG12866NP_001286425.1 MFS 308..>484 CDD:119392 48/181 (27%)
MFS 675..>839 CDD:119392 42/182 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.920

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