DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kar and mct-3

DIOPT Version :9

Sequence 1:NP_001189213.1 Gene:kar / 45883 FlyBaseID:FBgn0001296 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_510308.1 Gene:mct-3 / 181497 WormBaseID:WBGene00010834 Length:596 Species:Caenorhabditis elegans


Alignment Length:568 Identity:121/568 - (21%)
Similarity:207/568 - (36%) Gaps:164/568 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 PPDGGARAWLVMVSAFLCNGIIFGFINTYGVI------HSLLTDRLTKLGDPEASSKAALIGALA 131
            ||||| ..|.::.::||.|.|:.|.|.|.|.|      ||        .|..|||  ||:..::.
 Worm    33 PPDGG-YGWAIVAASFLLNMIVDGVIFTVGKILQPAWVHS--------FGISEAS--AAMTMSIL 86

  Fly   132 IGTTFLFSTMAGCLTDKIGLRLTTFAGGVLSAGGLLLSSFCTENIGALYFTYGIMFGLGAALAYT 196
            .|..|....:|..|.:..|.|....||.:::|.|.|| |....||..||.::|::.|.|..:.|.
 Worm    87 SGCYFFAGPIASVLCNVFGCRQVALAGSLIAALGFLL-SISAPNIYVLYVSFGLIAGAGFGMMYL 150

  Fly   197 PTLAILGHYFKRYLGKVSGFVTAGSSVFTVI---------------------------------- 227
            |.:.|:..||.:.....:|....||.:.|.:                                  
 Worm   151 PAIVIISQYFAKKRSVATGIAVCGSGIGTTVFALLNDVVWDFVGGDWKQFLVYTAAVTISGLGAC 215

  Fly   228 -----LPPCLD------KLLGSY----------------------GLE----GTLR-------IM 248
                 |.|..|      |:|..|                      .||    |.|.       |.
 Worm   216 ILLRPLKPSKDQIEKVAKVLEDYEEHKEKVPESPLLSKHNTPFLSSLELHTAGKLENGHHTGSIK 280

  Fly   249 SLVSAFIILCSFVYKPL------------------------------HPPP-------EPPKKKP 276
            |:|.|.......:.|||                              |...       |.|::..
 Worm   281 SIVDAVSKEIEDLNKPLLRKDIFYSGSTTNIAARSRTGTMTREEAAEHQQSLRFRGKVETPQQYL 345

  Fly   277 GRSRINL-------------------FLRSIINVEIWKRKRFVIWALCVPLALFGYFVPYVHMMQ 322
            .::.:|.                   .|:.:::.|:.....|::.|....|.|..::||::::..
 Worm   346 SKADLNAGDNGDVAIANESKIQEIKQALKQLVDKELLFSPSFLLLAFSGTLTLCCFYVPFIYLGN 410

  Fly   323 FVK-----TTFPGEDVNLPVMCIGITSGIGRLIFGVIADMPGVNRMYLQQLSLVSIGLVTLLLPL 382
            .:.     ||   .:.:..|..||:.:.:.|:..|::||.|.|:.:.:...:|::.||.|:.:||
 Worm   411 HLDKIEGLTT---AEKSFTVSLIGVLNIVARIGCGILADRPEVSALAVNNFALIAAGLATMTVPL 472

  Fly   383 TNSYVILVSFTLVMGLFDGCFISLLGPIAYEICGPSGATQAIGFLLGLSSIPLTVGPPVAGMIFD 447
            ..:|...::|.:...:...||.:|...|..|:.|....:.|.|.||....:...||.|:|..:.|
 Worm   473 YTAYWQFLAFCVPFSIGVACFAALRSIIVVELIGLEKLSNAFGILLTFMGVGAVVGSPLAAAMKD 537

  Fly   448 STNSYTLPLILAGLPPLLGSSLLFLIKCVKEEE----NGVSAPRAVVL 491
            .|.::.....:.|....:..::...:..:::.|    :...|.:|:.|
 Worm   538 YTGNFDTSFYVMGALMTISGAMCIPLGGLRKRELARSDSSDAKKAIEL 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
karNP_001189213.1 MFS 81..459 CDD:119392 111/522 (21%)
MFS_1 124..439 CDD:284993 90/453 (20%)
mct-3NP_510308.1 MFS_MCT_SLC16 39..563 CDD:340910 112/537 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 106 1.000 Domainoid score I4103
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H75089
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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