DRSC/TRiP Functional Genomics Resources

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Protein Alignment ix and med29

DIOPT Version :9

Sequence 1:NP_610677.1 Gene:ix / 45881 FlyBaseID:FBgn0001276 Length:188 Species:Drosophila melanogaster
Sequence 2:NP_001072872.1 Gene:med29 / 780334 XenbaseID:XB-GENE-1006668 Length:188 Species:Xenopus tropicalis


Alignment Length:189 Identity:63/189 - (33%)
Similarity:91/189 - (48%) Gaps:34/189 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 MQVMQSSPS-------------GPPGPVQHQQQQPPQPLQQQQQAEKLDNISRVKSLLGPLRESM 67
            |.:.||.|.             ||..||..||||    |..|||.:..|.:.|.:.|:..|:||:
 Frog     3 MLLNQSQPPQGREGGGTQVGSLGPGIPVGQQQQQ----LGLQQQQQDFDPVQRYRMLIPQLKESL 63

  Fly    68 FLTIRSSAFALQQNNLADNLKRDTGAHHVPRFDKHLEDFYACCDQIEIHLKTAMQCLQQQNSSNH 132
            ...::.:|..|.||...||.:::... .|.||||.||:|||.|||:|:.|:.|.:||.|...|..
 Frog    64 QNLMKIAAQNLVQNTNIDNGQKNADG-LVQRFDKSLEEFYAICDQLELCLRLAYECLSQSYDSAK 127

  Fly   133 YLPGPVTPMRMETFMPDNAGP-------ISYPTYLNTVRVHIQSAKDIHDTLISAAQNI 184
            :.|         |.:|....|       :.|..||:.::..|..|||||:.|:..::.|
 Frog   128 HSP---------TLVPTATKPDAVQTESLPYTQYLSMIKSQISCAKDIHNALLECSKKI 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ixNP_610677.1 Med29 48..186 CDD:288425 47/144 (33%)
med29NP_001072872.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 5/23 (22%)
Med29 45..177 CDD:371607 46/141 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8863
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 89 1.000 Inparanoid score I4973
OMA 1 1.010 - - QHG45671
OrthoDB 1 1.010 - - D1480686at2759
OrthoFinder 1 1.000 - - FOG0008041
OrthoInspector 1 1.000 - - oto102780
Panther 1 1.100 - - LDO PTHR28314
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4650
SonicParanoid 1 1.000 - - X5997
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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