DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldh and AT4G17260

DIOPT Version :9

Sequence 1:NP_001261474.1 Gene:Ldh / 45880 FlyBaseID:FBgn0001258 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_193459.1 Gene:AT4G17260 / 827440 AraportID:AT4G17260 Length:353 Species:Arabidopsis thaliana


Alignment Length:323 Identity:166/323 - (51%)
Similarity:224/323 - (69%) Gaps:14/323 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LPSSGH-KVTIVGIGQVGMASAFSILAQNVSKEVCLIDVCADKLQGELMDLQHGSNFLKNPQITA 79
            |||:.. ||::||:|.||||.|.:||.|:::.|:.|:|...|||:||::||||.:.||...:|||
plant    35 LPSNRRTKVSVVGVGNVGMAIAQTILTQDLADEIALVDAKPDKLRGEMLDLQHAAAFLPRTKITA 99

  Fly    80 STDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLVEYSPDTILLMVSNPVDIMT 144
            |.|:..:|.|.|||||||.||..|||||:|:|||..:.::|||.|.:.|||:||::||||||::|
plant   100 SVDYEVTAGSDLCIVTAGARQNPGESRLNLLQRNVALFRHIIPPLAKASPDSILIIVSNPVDVLT 164

  Fly   145 YVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHGWIIGEHGDSSVPVWSGVNIAGV 209
            ||||||||.|.|||:||||||||||||||::..|.|.......:|:||||||||.:||.:::.|:
plant   165 YVAWKLSGFPVNRVLGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGI 229

  Fly   210 RLRELNPILGTGE------DPEKWNELHKQVVDSAYEVIKLKGYTSWAIGLSTASLASAILRNTS 268
                  |:|...|      :.:...::|:.||.||||||.||||||||||.|.|:||..|||:..
plant   230 ------PVLSFLEKNQIAYEKQTLEDIHQAVVGSAYEVIGLKGYTSWAIGYSVANLARTILRDQR 288

  Fly   269 SVAAVSTSVLGEHGID-KDVFLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANIMSDVQAGL 330
            .:..|:....|.:|:| .|||||||.:|..|||.:|....:|..|.|:|||||..:.::|:.|
plant   289 KIHPVTVLARGFYGVDGGDVFLSLPALLGRNGVVAVTNVHMTDEEAEKLQKSAKTILEMQSQL 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LdhNP_001261474.1 LDH_1 18..329 CDD:133429 163/318 (51%)
AT4G17260NP_193459.1 PLN02602 1..353 CDD:178212 166/323 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 171 1.000 Domainoid score I1159
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56495
Inparanoid 1 1.050 313 1.000 Inparanoid score I730
OMA 1 1.010 - - QHG59943
OrthoDB 1 1.010 - - D1204514at2759
OrthoFinder 1 1.000 - - FOG0001004
OrthoInspector 1 1.000 - - oto3341
orthoMCL 1 0.900 - - OOG6_100601
Panther 1 1.100 - - LDO PTHR43128
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X661
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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