DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ldh and Mdh2

DIOPT Version :9

Sequence 1:NP_001261474.1 Gene:Ldh / 45880 FlyBaseID:FBgn0001258 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_112413.2 Gene:Mdh2 / 81829 RGDID:619719 Length:338 Species:Rattus norvegicus


Alignment Length:355 Identity:84/355 - (23%)
Similarity:151/355 - (42%) Gaps:84/355 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AQVAEVLPSSGHKVTIVGIGQVGMASAFSILAQN---VSKEVCLIDVCADKLQGELMDLQH---- 67
            |:|| ||.:||      ||||     ..|:|.:|   ||: :.|.|:.  ...|...||.|    
  Rat    25 AKVA-VLGASG------GIGQ-----PLSLLLKNSPLVSR-LTLYDIA--HTPGVAADLSHIETR 74

  Fly    68 -------GSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLV 125
                   |...|  |......|        :.::.|||.:|.|.:|..|...|..|:..:.....
  Rat    75 ANVKGYLGPEQL--PDCLKGCD--------VVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACA 129

  Fly   126 EYSPDTILLMVSNPVDI---MTYVAWKLSGL-PKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCH 186
            ::.|:.::.::||||:.   :|...:|..|: ..|::.|. |.||..|....:::..|:.|...:
  Rat   130 QHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANTFVAELKGLDPARVN 193

  Fly   187 GWIIGEH-GDSSVPVWSGVNIAGVRLRELNPILGTGEDPEKWNELHKQVVDSAYEVIKLKGYTSW 250
            ..:||.| |.:.:|:          :.:..|.:...:|  :...|..::.::..||:|.|.    
  Rat   194 VPVIGGHAGKTIIPL----------ISQCTPKVDFPQD--QLATLTGRIQEAGTEVVKAKA---- 242

  Fly   251 AIGLSTASLASAILRNTSSVAAVSTSVLGEHGI-------DKD---VFLSLPCVLNANGVTSVVK 305
            ..|.:|.|:|.|..|   .|.::..::.|:.|:       .|:   .:.|.|.:|...|:.   |
  Rat   243 GAGSATLSMAYAGAR---FVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLE---K 301

  Fly   306 QI----LTPTEVEQLQKSANIMSDVQAGLK 331
            .:    :||.|.:.:   |..:.:::|.:|
  Rat   302 NLGIGKITPFEEKMI---AEAIPELKASIK 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LdhNP_001261474.1 LDH_1 18..329 CDD:133429 77/343 (22%)
Mdh2NP_112413.2 MDH_euk_gproteo 26..335 CDD:130833 83/354 (23%)
MDH_glyoxysomal_mitochondrial 26..334 CDD:133422 83/354 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.