DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldh and mdh1aa

DIOPT Version :9

Sequence 1:NP_001261474.1 Gene:Ldh / 45880 FlyBaseID:FBgn0001258 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001303854.1 Gene:mdh1aa / 399662 ZFINID:ZDB-GENE-040204-1 Length:354 Species:Danio rerio


Alignment Length:364 Identity:74/364 - (20%)
Similarity:134/364 - (36%) Gaps:87/364 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 KVTIVG-IGQVGMASAFSILAQNV-SKEVCLIDVCAD------KLQGELMDLQHGSNFLKNPQIT 78
            :|.:.| .||:..:..:||...:| .|:..:|.|..|      .|.|.:|:||..:..|....|.
Zfish     6 RVLVTGAAGQIAYSLLYSIAKGDVFGKDQPIILVLLDITPMLPVLDGVVMELQDCALPLLREVIP 70

  Fly    79 ASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLVEYSPDTI-LLMVSNPVDI 142
            .........:....|:...:.:|||..|..|::.|..|.|.....|.:|:..|: :|:|.||.:.
Zfish    71 TDKVEVGFKDLDAAILVGSMPRKEGMERKDLLKANVAIFKTQGEALEKYAKKTVKVLVVGNPANT 135

  Fly   143 MTYVAWKLS-GLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHGWII-GEHGDSSVPVWSGVN 205
            ...:|.|.: .:||.. ....|.||.:|.|..::.|:||...|.....| |.|..:..|      
Zfish   136 NCLIASKSAPSIPKEN-FSCLTRLDHNRARSQVAMRVGVPSDSVKNVTIWGNHSSTQYP------ 193

  Fly   206 IAGVRLRELNPILGTGEDPEKWNELHKQVVD------SAYEVIKLKGYTSWAIG--LSTASLASA 262
                                   ::|..:|.      :|::.:..:   ||..|  :||.....|
Zfish   194 -----------------------DVHHAIVTRNGKEIAAFDAVNDE---SWLKGDFISTVQQRGA 232

  Fly   263 IL---RNTSSVAAVSTSVL------------GE------------HGIDKDVFLSLPC------- 293
            .:   |..||..:.:.::.            ||            :|:..|:..|.|.       
Zfish   233 AVIKARKLSSAMSAAKAICDHMRDIWFGTPDGEWVSMGIYSSGNSYGVPDDLMYSFPVKIKNKSW 297

  Fly   294 -VLNANGVTSVVKQILTPTEVEQLQKSANIMSDVQAGLK 331
             |::...:....:..:..|..|.:::....::.:.| |:
Zfish   298 KVVDGLSINDFSRGKMDATAAELVEERDTALTFLSAXLQ 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LdhNP_001261474.1 LDH_1 18..329 CDD:133429 72/360 (20%)
mdh1aaNP_001303854.1 PRK05442 1..326 CDD:235468 72/352 (20%)
MDH_cytoplasmic_cytosolic 3..328 CDD:133421 72/354 (20%)
PTS1 352..354
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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