DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldh and ldhb

DIOPT Version :9

Sequence 1:NP_001261474.1 Gene:Ldh / 45880 FlyBaseID:FBgn0001258 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_988882.1 Gene:ldhb / 394477 XenbaseID:XB-GENE-5908187 Length:334 Species:Xenopus tropicalis


Alignment Length:334 Identity:200/334 - (59%)
Similarity:262/334 - (78%) Gaps:5/334 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAAIKDSLLAQVAE---VLPSSGHKVTIVGIGQVGMASAFSILAQNVSKEVCLIDVCADKLQGEL 62
            ||::::.|:..|.:   ..|.  :|:|:||:||||||.|.|:|.:::..|:.|:|:..|||:||:
 Frog     1 MASVQEKLITPVCQDKAAKPK--NKITVVGVGQVGMACAVSVLQKDLCDELALVDILEDKLKGEM 63

  Fly    63 MDLQHGSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLVEY 127
            |||||||.|||...|.|..|::.:||||:.:||.||||:||||||:|||||.::.|.|||::|:|
 Frog    64 MDLQHGSLFLKTSVIVADKDYSVTANSRIVVVTGGVRQQEGESRLNLVQRNVNVFKFIIPQVVKY 128

  Fly   128 SPDTILLMVSNPVDIMTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHGWIIGE 192
            |||.|:::|||||||:|||.||||||||:|:|||||||||:|||:|:.:|||:.|:||||:|:||
 Frog   129 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRIIGSGTNLDSARFRYLIGERLGIHPSSCHGFILGE 193

  Fly   193 HGDSSVPVWSGVNIAGVRLRELNPILGTGEDPEKWNELHKQVVDSAYEVIKLKGYTSWAIGLSTA 257
            ||||||.||||||:|||.|:.|||.:|:.:|..||.|:||||||||||||||||||:||||.|.|
 Frog   194 HGDSSVAVWSGVNVAGVGLQSLNPEVGSDQDSSKWKEVHKQVVDSAYEVIKLKGYTNWAIGFSVA 258

  Fly   258 SLASAILRNTSSVAAVSTSVLGEHGIDKDVFLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANI 322
            .:..:|.:|.|.|..|||.|.|.:||:.:||||||||||.||:|||:.|.|...||.||||||..
 Frog   259 DIIESITKNMSRVHPVSTMVKGMYGIENEVFLSLPCVLNGNGLTSVINQKLKDEEVGQLQKSAET 323

  Fly   323 MSDVQAGLK 331
            :..:|..||
 Frog   324 LWGIQKDLK 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LdhNP_001261474.1 LDH_1 18..329 CDD:133429 193/310 (62%)
ldhbNP_988882.1 LDH_1 19..330 CDD:133429 194/312 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 217 1.000 Domainoid score I2627
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 410 1.000 Inparanoid score I1818
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1204514at2759
OrthoFinder 1 1.000 - - FOG0001004
OrthoInspector 1 1.000 - - otm47624
Panther 1 1.100 - - LDO PTHR43128
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R655
SonicParanoid 1 1.000 - - X661
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.190

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