DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldh and LDHA

DIOPT Version :9

Sequence 1:NP_001261474.1 Gene:Ldh / 45880 FlyBaseID:FBgn0001258 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001158886.1 Gene:LDHA / 3939 HGNCID:6535 Length:361 Species:Homo sapiens


Alignment Length:332 Identity:199/332 - (59%)
Similarity:261/332 - (78%) Gaps:0/332 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAAIKDSLLAQVAEVLPSSGHKVTIVGIGQVGMASAFSILAQNVSKEVCLIDVCADKLQGELMDL 65
            ||.:||.|:..:.:...:..:|:|:||:|.||||.|.|||.::::.|:.|:||..|||:||:|||
Human    30 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDL 94

  Fly    66 QHGSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLVEYSPD 130
            ||||.||:.|:|.:..|:..:|||:|.|:|||.||:||||||:|||||.:|.|.|||.:|:|||:
Human    95 QHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPN 159

  Fly   131 TILLMVSNPVDIMTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHGWIIGEHGD 195
            ..||:|||||||:||||||:||.|||||||||.||||:|||:||.:||||.|.|||||::|||||
Human   160 CKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGD 224

  Fly   196 SSVPVWSGVNIAGVRLRELNPILGTGEDPEKWNELHKQVVDSAYEVIKLKGYTSWAIGLSTASLA 260
            ||||||||:|:|||.|:.|:|.|||.:|.|:|.|:|||||:|||||||||||||||||||.|.||
Human   225 SSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLA 289

  Fly   261 SAILRNTSSVAAVSTSVLGEHGIDKDVFLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANIMSD 325
            .:|::|...|..|||.:.|.:||..|||||:||:|..||::.:||..||..|..:|:|||:.:..
Human   290 ESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWG 354

  Fly   326 VQAGLKF 332
            :|..|:|
Human   355 IQKELQF 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LdhNP_001261474.1 LDH_1 18..329 CDD:133429 192/310 (62%)
LDHANP_001158886.1 LDH_1 48..358 CDD:133429 192/309 (62%)
L-LDH-NAD 54..353 CDD:273796 189/298 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 222 1.000 Domainoid score I2593
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56495
Inparanoid 1 1.050 428 1.000 Inparanoid score I1739
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59943
OrthoDB 1 1.010 - - D1204514at2759
OrthoFinder 1 1.000 - - FOG0001004
OrthoInspector 1 1.000 - - otm40444
orthoMCL 1 0.900 - - OOG6_100601
Panther 1 1.100 - - O PTHR43128
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R655
SonicParanoid 1 1.000 - - X661
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.870

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