DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ldh and Mdh1b

DIOPT Version :9

Sequence 1:NP_001261474.1 Gene:Ldh / 45880 FlyBaseID:FBgn0001258 Length:332 Species:Drosophila melanogaster
Sequence 2:XP_038939577.1 Gene:Mdh1b / 316444 RGDID:1307874 Length:565 Species:Rattus norvegicus


Alignment Length:330 Identity:69/330 - (20%)
Similarity:114/330 - (34%) Gaps:120/330 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 ASAFSILAQNVSKEV-----CL---IDVCADKLQGELMD---------LQHGSNFLKNPQITAST 81
            |....||..:..:||     ||   :.:|  :|.|.|::         :..|.:|| |.:.|...
  Rat   243 AEVIIILDDSTDEEVYNMESCLRSRVPLC--RLYGYLIEKNAHKSVKVIVGGKSFL-NLKTTLLI 304

  Fly    82 DFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLVEYSPDTIL---LMVSNPVDIM 143
            .:|.|..|.:..|..|:   ||:::..|.::     ...||..::   |.|:   :..:|.||  
  Rat   305 QYAPSLASNIIAVALGL---EGQAKAVLARK-----MKTIPSRIK---DVIIWGNITGNNYVD-- 356

  Fly   144 TYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCHG---------WIIGEHGDSSVP 199
                     |.|.:|.    |.:|:         :...|...|.         ||..|.      
  Rat   357 ---------LRKAKVY----NYESA---------IRGPPGYYHSVLSLIFDREWITKEF------ 393

  Fly   200 VWSGVNIAGVRLRELNPILGTGEDPEKWNELHKQV--VDSAYEVIKLKGYTSWAIGLSTASLASA 262
                       :|.|..:..||          ||.  :.:|:.:.....|  |..|.....:   
  Rat   394 -----------VRTLKDLSSTG----------KQFGGILAAHSIATTLKY--WYYGSPPGEI--- 432

  Fly   263 ILRNTSSVAAVSTSVL--GEHGIDKDVFLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANIMSD 325
                      ||..|:  |:.||.:.:..|:| |...||...|:      |::|.|..|..|::.
  Rat   433 ----------VSLGVMSEGQFGIPEGIVFSMP-VKFENGTWVVL------TDLEDLSLSEKIINR 480

  Fly   326 VQAGL 330
            :...|
  Rat   481 LTGDL 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LdhNP_001261474.1 LDH_1 18..329 CDD:133429 68/327 (21%)
Mdh1bXP_038939577.1 NADB_Rossmann 44..494 CDD:419666 69/330 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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