DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ImpE1 and lrp1bb

DIOPT Version :9

Sequence 1:NP_001261577.1 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:XP_021334671.1 Gene:lrp1bb / 559293 ZFINID:ZDB-GENE-070912-401 Length:4600 Species:Danio rerio


Alignment Length:294 Identity:90/294 - (30%)
Similarity:115/294 - (39%) Gaps:87/294 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1380 CNRRGVC-----------DCA--AGEEGSQCSAERTGCSPGTFQCRSSGVCISWFFVCDGRADCN 1431
            ||...:|           ||.  |.|...|.| :...|:.|.|.| .||.|||..::|||:.||.
Zfish  2614 CNTTSLCVHHSWLCDGANDCGDYADERNCQVS-QGQKCAEGHFAC-PSGNCISSVWLCDGQKDCE 2676

  Fly  1432 DASDE-ECTHNARLNQ-----------------------------------TCPTESFRCQRSGR 1460
            |.:|| :|..:...||                                   ||....|.|..|..
Zfish  2677 DGADEFQCDSSCLWNQFACSKNKCIAKQWLCDGEDDCGDGVDESVDLCGSVTCAPGLFSCPGSYA 2741

  Fly  1461 CISRAALCDGRRQCPHGEDELGCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGSDEP 1525
            |:.:..||||.|.||.|.|||...|... .|.|.|::|||.:..|:|:...|:....|.|||||.
Zfish  2742 CVPKRWLCDGERDCPDGSDELAAAGCAP-NNTCDENSFRCLNKGCIPKRFVCDHDNDCGDGSDES 2805

  Fly  1526 PHL----CGSRALPNLFMRLIEAGGLLGGGRREADAY--CPHR---------------------- 1562
            ...    ||    |:.| |..: |..|...:.|.|.|  ||..                      
Zfish  2806 LECVYRSCG----PDEF-RCAD-GRCLLSAQWECDGYPDCPDHSDELPLNLKCLAAESLCNSSFF 2864

  Fly  1563 -CSNGLCRSTAIVCSGRDGCGDGTDEQTCSVCRC 1595
             ||||.|.|...:|..:|.|||.:||:.|:|..|
Zfish  2865 MCSNGRCISEKSLCDMKDDCGDRSDEKNCNVNEC 2898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_001261577.1 EB 75..131 CDD:279949
LDLa 1404..1437 CDD:238060 17/33 (52%)
LDLa 1448..1483 CDD:238060 16/34 (47%)
LDLa 1493..1524 CDD:238060 12/30 (40%)
LDLa 1561..1590 CDD:238060 13/51 (25%)
lrp1bbXP_021334671.1 LDLa 38..76 CDD:294076
FXa_inhibition 128..156 CDD:317114
LY 238..274 CDD:214531
LY 282..324 CDD:214531
LY 326..367 CDD:214531
FXa_inhibition 452..484 CDD:317114
LY 516..558 CDD:214531
LY 559..598 CDD:214531
LY 605..654 CDD:214531
LY 655..697 CDD:214531
FXa_inhibition 766..801 CDD:317114
LDLa 854..887 CDD:238060
LDLa 895..926 CDD:197566
LDLa 939..970 CDD:238060
LDLa 974..1005 CDD:197566
LDLa 1021..1056 CDD:238060
LDLa 1065..1099 CDD:238060
FXa_inhibition 1144..1180 CDD:317114
FXa_inhibition 1192..1220 CDD:317114
LY 1248..1289 CDD:214531
LY 1295..1337 CDD:214531
LY 1339..1382 CDD:214531
LY <1394..1427 CDD:214531
Ldl_recept_b 1586..1625 CDD:278487
LY 1609..1651 CDD:214531
LY 1653..1693 CDD:214531
LY <1703..1734 CDD:214531
FXa_inhibition 1806..1842 CDD:317114
NHL <1858..1941 CDD:302697
NHL repeat 1879..1916 CDD:271320
LY 1915..1955 CDD:214531
Ldl_recept_b 1976..2016 CDD:278487
LY 2001..2041 CDD:214531
FXa_inhibition 2115..2150 CDD:317114
Ldl_recept_b 2298..2339 CDD:278487
LY 2323..2365 CDD:214531
FXa_inhibition 2436..2470 CDD:317114
LDLa 2482..2511 CDD:238060
LDLa 2520..2554 CDD:238060
LDLa 2559..2593 CDD:238060
LDLa <2613..2642 CDD:294076 7/27 (26%)
LDLa 2650..2684 CDD:238060 17/34 (50%)
LDLa 2688..2719 CDD:238060 2/30 (7%)
LDLa 2728..2761 CDD:197566 14/32 (44%)
LDLa 2772..2804 CDD:197566 12/31 (39%)
LDLa 2813..2846 CDD:238060 12/38 (32%)
LDLa 2859..2893 CDD:238060 13/33 (39%)
cEGF 2916..2939 CDD:315355
EGF_CA 2936..2969 CDD:214542
LY 3003..3047 CDD:214531
LY 3050..3086 CDD:214531
LY 3135..3174 CDD:214531
FXa_inhibition 3245..3281 CDD:317114
LDLa 3285..3316 CDD:197566
LDLa 3325..3359 CDD:238060
LDLa 3364..3399 CDD:238060
LDLa 3404..3439 CDD:238060
LDLa 3444..3478 CDD:238060
LDLa 3483..3517 CDD:238060
LDLa 3521..3555 CDD:238060
LDLa 3563..3597 CDD:238060
LDLa 3601..3636 CDD:238060
LDLa 3643..3675 CDD:238060
LDLa 3730..3765 CDD:238060
Ldl_recept_b 4008..4048 CDD:278487
LY 4032..4073 CDD:214531
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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