DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ImpE1 and sorl1

DIOPT Version :9

Sequence 1:NP_001261577.1 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:XP_005157607.1 Gene:sorl1 / 497306 ZFINID:ZDB-GENE-050208-22 Length:2213 Species:Danio rerio


Alignment Length:339 Identity:95/339 - (28%)
Similarity:122/339 - (35%) Gaps:111/339 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1321 ADEP-----TPEP------VSPAAIPSASLAAIKPGTELRKRVDLGLEAVSLGLACSSDRQCQ-- 1372
            ||:|     .|:|      |.|..:|::.|.                         |.:||||  
Zfish  1023 ADQPCSLLCLPQPGNQRHCVCPDGVPTSVLP-------------------------SGERQCQCP 1062

  Fly  1373 -----------------LADPHTVCNRRGVC-----------DCAAGEEGSQCSAERTGCSPGT- 1408
                             |.:.|...|  |.|           ||....:..:|..  |.|.|.. 
Zfish  1063 SGYQLHNNTCVKTEHTCLPNQHRCAN--GKCISSIWKCDSDNDCGDMSDEQECPT--TSCDPSVQ 1123

  Fly  1409 FQCRSSGVCISWFFVCDGRADCNDASDEE-CTHNARLNQTCPTESFRCQRSGRCISRAALCDGRR 1472
            |:|.:||.||...|.||...||.|.|||| |.     :..|....|.|.| |.||..|..|||..
Zfish  1124 FRCVASGSCIPLAFKCDHEDDCGDNSDEEHCE-----SHKCGPGEFTCAR-GACIRDAWRCDGDN 1182

  Fly  1473 QCPHGEDELGCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGSDEPPHLCGSRALPNL 1537
            .|....||..|   ..|.:.|...:|:|.:|.|:|:...|:....|:|||||.|..||.:     
Zfish  1183 DCRDWSDEANC---TVGHHTCESSSFQCHTGHCIPQRWVCDGDDDCQDGSDEDPTQCGRQ----- 1239

  Fly  1538 FMRLIEAGGLLGGGRREADAYCPHRCSNGLCRSTAIVCSGRDGCGDGTDEQTCSVCRCPAPTAAS 1602
                 :..|.|              ||||.|...:..|:|.:.|..|.|||.|      .|..|.
Zfish  1240 -----KCNGFL--------------CSNGTCLPASAHCNGVEDCPGGADEQNC------GPLCAH 1279

  Fly  1603 LPAFLARQRPMPLW 1616
            ...|:.|.|...|:
Zfish  1280 YMEFVCRNRAQCLF 1293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_001261577.1 EB 75..131 CDD:279949
LDLa 1404..1437 CDD:238060 16/33 (48%)
LDLa 1448..1483 CDD:238060 14/34 (41%)
LDLa 1493..1524 CDD:238060 11/30 (37%)
LDLa 1561..1590 CDD:238060 12/28 (43%)
sorl1XP_005157607.1 VPS10 130..754 CDD:214740
Sortilin_C 589..754 CDD:292523
LY 781..822 CDD:214531
LY 825..864 CDD:214531
LY 868..912 CDD:214531
LY 916..954 CDD:214531
LDLa 1079..1113 CDD:238060 7/35 (20%)
LDLa 1118..1154 CDD:238060 18/35 (51%)
LDLa 1159..1193 CDD:238060 14/34 (41%)
LDLa 1242..1273 CDD:238060 14/44 (32%)
LDLa 1282..1310 CDD:197566 4/12 (33%)
LDLa 1327..1361 CDD:238060
LDLa 1376..1405 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1474..1509 CDD:238060
LDLa 1522..1551 CDD:238060
FN3 1559..>1630 CDD:238020
FN3 1653..1743 CDD:238020
FN3 1750..1827 CDD:238020
FN3 1931..2007 CDD:238020
FN3 2022..2097 CDD:214495
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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