DRSC/TRiP Functional Genomics Resources

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Protein Alignment ImpE1 and ldlra

DIOPT Version :9

Sequence 1:NP_001261577.1 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:NP_001025454.1 Gene:ldlra / 387529 ZFINID:ZDB-GENE-031217-1 Length:911 Species:Danio rerio


Alignment Length:256 Identity:77/256 - (30%)
Similarity:103/256 - (40%) Gaps:47/256 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1356 LEAVSL-------GLACSSDRQCQLADPHTVCNRRGVC----DCAAGEEGSQCSAERTGCSPGTF 1409
            |.||:|       .|.|.| ||.|..:...: ..|.||    ||..|.:....:.....|.|..|
Zfish     8 LLAVTLFCPVQSGALTCDS-RQYQCGNGKCI-TARWVCDETDDCGDGTDELPAACLAKTCRPSQF 70

  Fly  1410 QCRSS-GVCISWFFVCDGRADC-NDASDEECTHNARLNQTCPTESFRCQRSGRCISRAALCDGRR 1472
            .|... ..||...:.|||:||| |:|.:|.|.     .:.|....||| .||:|::.|.:||...
Zfish    71 SCGGRLNQCIPKSWKCDGKADCENNADEEGCD-----PRQCHDGEFRC-GSGQCVTAAFVCDDEI 129

  Fly  1473 QCPHGEDELGCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGSDEPPHLCGSRALPNL 1537
            .|..|.||:.|..:     .|...:|||.:.:|:|....|:....|.|.|||.|..||.      
Zfish   130 DCEDGSDEVSCPPT-----TCGSSSFRCNNAQCVPRLWVCDGDADCADNSDELPEKCGP------ 183

  Fly  1538 FMRLIEAGGLLGGGRREADAYC---PHRCSNGLCRSTAIVCSGRDGCGDGTDEQTCSVCRC 1595
                        |..:.....|   ...|.:|.|...:..|.|...|.|.:|||.||:..|
Zfish   184 ------------GTSKPTKNPCTSMEFHCGSGECIHGSWKCDGGADCLDHSDEQNCSLPTC 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_001261577.1 EB 75..131 CDD:279949
LDLa 1404..1437 CDD:238060 14/34 (41%)
LDLa 1448..1483 CDD:238060 14/34 (41%)
LDLa 1493..1524 CDD:238060 10/30 (33%)
LDLa 1561..1590 CDD:238060 10/28 (36%)
ldlraNP_001025454.1 LDLa 23..55 CDD:197566 11/33 (33%)
Ldl_recept_a 63..101 CDD:365841 15/37 (41%)
LDLa 106..140 CDD:238060 14/34 (41%)
LDLa 144..176 CDD:197566 10/31 (32%)
Ldl_recept_a 192..227 CDD:365841 11/34 (32%)
Ldl_recept_a 231..266 CDD:365841 1/2 (50%)
LDLa 274..304 CDD:238060
FXa_inhibition 314..348 CDD:373209
EGF_CA 350..380 CDD:214542
Ldl_recept_b 437..481 CDD:278487
Ldl_recept_b 485..525 CDD:278487
LY 510..551 CDD:214531
Ldl_recept_b 572..611 CDD:278487
FXa_inhibition 623..664 CDD:373209
PHA03247 <666..808 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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