DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ImpE1 and Cd320

DIOPT Version :10

Sequence 1:NP_524849.2 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:NP_001014223.1 Gene:Cd320 / 362851 RGDID:1305860 Length:264 Species:Rattus norvegicus


Alignment Length:220 Identity:58/220 - (26%)
Similarity:74/220 - (33%) Gaps:80/220 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1311 VVTTLMPLMTADEPTPEPVSPAAIPSASLAAIKPGTELRKRVDLGLEAVSLGLACSSDRQCQLAD 1375
            |:..|:.|.|..|..|.|.|                                           |.
  Rat    15 VLRLLLGLRTGPEAAPAPTS-------------------------------------------AP 36

  Fly  1376 PHTVCNRRGVCDCAAGEEGSQCSAERTG-CSPGTFQCRSSGVCISWFFVCDGRADCNDASDEECT 1439
            .||:.               |.|..|.| |...||:|.:||.|:...:.|||..||:|.||||  
  Rat    37 AHTLV---------------QVSGPRAGSCPTDTFKCLTSGYCVPLSWRCDGDRDCSDGSDEE-- 84

  Fly  1440 HNARLNQTCPTESFRCQRSGRCISRAAL---CDGRRQCPHGEDE-LGCDGSVKGGNACPEHTFRC 1500
                   .|..|.  |.::.:|..:.||   ||....|..|.|: |.|..|     .|.|...||
  Rat    85 -------ECRIEP--CAQNRQCQPQPALPCSCDNISGCSAGSDKNLNCSRS-----PCQEGELRC 135

  Fly  1501 GSGE-CLPEYEYCNAIVSCKDGSDE 1524
            ...: |:|....|:....|.|.|||
  Rat   136 ILDDVCIPHTWRCDGHPDCPDSSDE 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_524849.2 EB 75..131 CDD:460294
rne <795..981 CDD:236766
LDLa 1404..1437 CDD:238060 15/32 (47%)
LDLa 1448..1483 CDD:238060 12/38 (32%)
LDLa 1493..1524 CDD:238060 10/31 (32%)
Cd320NP_001014223.1 LDLa 51..86 CDD:238060 17/43 (40%)
LDLa 128..163 CDD:238060 12/33 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.