DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ImpE1 and Lrp8

DIOPT Version :9

Sequence 1:NP_001261577.1 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:XP_006238632.1 Gene:Lrp8 / 362558 RGDID:1305729 Length:1013 Species:Rattus norvegicus


Alignment Length:398 Identity:105/398 - (26%)
Similarity:136/398 - (34%) Gaps:128/398 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1248 LESTTNIDGLQELDNNHIEEEEPA------------AHAIPH------EEATPNPADIVEITTQT 1294
            :.|....|...:..:|..|::.|.            .|.||.      ||..|:.:|        
  Rat    57 IPSVWRCDEDNDCSDNSDEDDCPKRTCTDSDFTCDNGHCIPERWKCDGEEECPDGSD-------- 113

  Fly  1295 MLGLASRVTLMEPAAPVVTTLMPLMTADEPTPEPVSPAAIPSASLAAIKPGTELRKRVDLGLEAV 1359
                .|:.|......|          |::.:..|.|...:|::                      
  Rat   114 ----ESKATCSSEECP----------AEKLSCGPTSHKCVPAS---------------------- 142

  Fly  1360 SLGLACSSDRQCQ----------LADPHTV-CNRRG------VC----DCAAGEEGSQCSAERTG 1403
               ..|..::.|:          |..||.. |:.|.      ||    ||..|.:...||  ...
  Rat   143 ---WRCDGEKDCEGGADEAGCPTLCAPHEFQCSNRSCLASVFVCDGDDDCGDGSDERGCS--DPA 202

  Fly  1404 CSPGTFQCRSSGVCISWFFVCDGRADCNDASDEECTHNARLNQ-------TC-PTESFRCQRSGR 1460
            |.|..|:|...|.||...:||||:.||.|.|||......|..|       .| ||..|.| |||.
  Rat   203 CPPREFRCGGGGTCIPERWVCDGQFDCEDRSDEAAELCGRAGQGTTATPAACAPTTQFTC-RSGE 266

  Fly  1461 CISRAALCDGRRQCPHGEDELGCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGSDEP 1525
            ||.....|||.|.|....||..|  |..|  .|.|:.|:||.|.|:...:.||....|.||||  
  Rat   267 CIHLGWRCDGDRDCKDKSDEADC--SAPG--PCRENDFQCGDGTCILAIKRCNQERDCLDGSD-- 325

  Fly  1526 PHLCGSRALPNLFMRLIEAGGLLGGGRREADAYCPHR--CSNGLCRSTAIVCSGRDGCGDGTDEQ 1588
                             |||.|     :|:....|.|  |.:|.|.....||..:..|.|.:||.
  Rat   326 -----------------EAGCL-----QESTCEGPRRFQCKSGECVDGGKVCDDQRDCRDWSDEP 368

  Fly  1589 TCSVCRCP 1596
            . .||..|
  Rat   369 Q-KVCVAP 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_001261577.1 EB 75..131 CDD:279949
LDLa 1404..1437 CDD:238060 16/32 (50%)
LDLa 1448..1483 CDD:238060 17/35 (49%)
LDLa 1493..1524 CDD:238060 13/30 (43%)
LDLa 1561..1590 CDD:238060 10/30 (33%)
Lrp8XP_006238632.1 LDLa 44..78 CDD:238060 4/20 (20%)
LDLa 82..114 CDD:197566 7/43 (16%)
LDLa 124..160 CDD:238060 7/70 (10%)
LDLa 203..235 CDD:197566 15/31 (48%)
LDLa 256..289 CDD:238060 16/33 (48%)
LDLa 295..329 CDD:238060 16/52 (31%)
LDLa 333..369 CDD:294076 11/35 (31%)
FXa_inhibition 390..424 CDD:291342
EGF_CA 426..456 CDD:214542
LY 495..530 CDD:214531
LY 540..581 CDD:214531
Ldl_recept_b 602..642 CDD:278487
LY 626..668 CDD:214531
Ldl_recept_b 689..728 CDD:278487
FXa_inhibition 747..784 CDD:291342
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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