DRSC/TRiP Functional Genomics Resources

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Protein Alignment ImpE1 and Lrp12

DIOPT Version :9

Sequence 1:NP_001261577.1 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:NP_001128355.1 Gene:Lrp12 / 314941 RGDID:1304943 Length:858 Species:Rattus norvegicus


Alignment Length:361 Identity:71/361 - (19%)
Similarity:93/361 - (25%) Gaps:179/361 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly  1375 DPHTVCNR----RGVC-----DCAAGEEGSQCSAERT--------------GCSPGTFQCRSS-- 1414
            :||..|::    .|.|     .|.:.:|....|.|..              .|:...|||.|.  
  Rat   163 EPHCACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVCVQDAHPPTTTAFQPCAYNQFQCLSRFT 227

  Fly  1415 --GVCISWFFVCDGRADCNDASDE--------------------------------ECT------ 1439
              ..|:.....|||..||.|..||                                .||      
  Rat   228 KVYTCLPESLKCDGNIDCLDLGDEIDCDMPTCGQWLKYFYGTFSSPNYPDFYPPGSNCTWLIDTG 292

  Fly  1440 ------------------------------HNAR------------------------------- 1443
                                          .|.|                               
  Rat   293 DHRKVILRFTDFKLDGTGYGDYVKIYDGLEENPRKLLRVLTAFDSHAPLTVVSSSGQIRVHFCAD 357

  Fly  1444 -------LNQTCPTESF------RCQRSGRCISRAALCDGRRQCPHGEDELGCDGSVKGGNACPE 1495
                   .|.|...:.|      .|..:..|.:....|||...||:|.||:.|       ..|.:
  Rat   358 KVNAARGFNATYQVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDEINC-------TMCQK 415

  Fly  1496 HTFRCG-SGECLPEYEYCNAIVSCKDGSDEPPHLCGSRALPNLFMRLIEAGGLLGGGRREADAYC 1559
            ..|.|. :|.|.|..:.||....|.:||||          .|.|                   :|
  Rat   416 EEFPCSRNGVCYPRSDRCNYQNHCPNGSDE----------KNCF-------------------FC 451

  Fly  1560 P---HRCSNGLCRSTAIVCSGRDGCGDGTDEQTCSV 1592
            .   ..|.|..|...:.||..:|.||||:||::|.|
  Rat   452 QPGNFHCKNNRCVFESWVCDSQDDCGDGSDEESCPV 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_001261577.1 EB 75..131 CDD:279949
LDLa 1404..1437 CDD:238060 14/68 (21%)
LDLa 1448..1483 CDD:238060 11/40 (28%)
LDLa 1493..1524 CDD:238060 11/31 (35%)
LDLa 1561..1590 CDD:238060 12/28 (43%)
Lrp12NP_001128355.1 CUB 47..158 CDD:238001
LDLa 166..200 CDD:238060 7/33 (21%)
LDLa 215..254 CDD:238060 14/38 (37%)
CUB 267..371 CDD:238001 6/103 (6%)
LDLa 375..410 CDD:238060 10/34 (29%)
LDLa 413..448 CDD:238060 13/44 (30%)
LDLa 451..485 CDD:238060 13/33 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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