DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ImpE1 and Lrp6

DIOPT Version :10

Sequence 1:NP_524849.2 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:NP_001388749.1 Gene:Lrp6 / 312781 RGDID:1304749 Length:1613 Species:Rattus norvegicus


Alignment Length:387 Identity:92/387 - (23%)
Similarity:135/387 - (34%) Gaps:118/387 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1227 FDLTDHSDVNRFNELQSESLILE----------STTNIDGLQELDNNHI------EEEEPAAHAI 1275
            |.:...|..|:..|:|...|.::          ..||:..:..||...:      |::.|.|..:
  Rat  1000 FTVVVSSVPNQNLEIQPYDLSIDIYSRYIYWTCEATNVIDVTRLDGRSVGVVLKGEQDRPRAIVV 1064

  Fly  1276 PHE----------EATPN----PADIVEITTQTMLGLASRVTLMEPAAPVVTTLMPLMTADEPTP 1326
            ..|          |.:|.    ..|..|.......||:..|.|     .:.:.|..|..||... 
  Rat  1065 NPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPVAL-----ALDSKLSRLFWADSDL- 1123

  Fly  1327 EPVSPAAIPSASLAA--------------------------IKPGTELRKRVDL-GLEAVSLGLA 1364
                 ..|.|:.|:.                          |....::.:::|: |.|    |..
  Rat  1124 -----RRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGRE----GRT 1179

  Fly  1365 CSSDRQCQLADPHTV------------CNR-RGVCD--C-AAGEEGSQCS--------------A 1399
            ....|..||:|.|.|            |.: .|.|.  | ..|:..::||              .
  Rat  1180 KVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCG 1244

  Fly  1400 ERTGCSPGTFQCRSSGV-CISWFFVCDGRADCNDASDEECTHNARLN-QTCPTESFRCQRSGRCI 1462
            |...|||..|.|.:..: ||...:.|||..:|.|.|||       || ..|....|:| .||:||
  Rat  1245 EPPTCSPQQFTCFTGDIDCIPVAWRCDGFTECEDHSDE-------LNCPVCSESQFQC-ASGQCI 1301

  Fly  1463 SRAALCDGRRQCPHGEDELGCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGSDE 1524
            ..|..|:|...|....||..|:      ..|....|||.:|:|:.:::.|:..|.|.|.|||
  Rat  1302 DGALRCNGDANCQDKSDEKNCE------VLCLIDQFRCANGQCVGKHKKCDHNVDCSDRSDE 1357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_524849.2 EB 75..131 CDD:460294
rne <795..981 CDD:236766
LDLa 1404..1437 CDD:238060 14/33 (42%)
LDLa 1448..1483 CDD:238060 13/34 (38%)
LDLa 1493..1524 CDD:238060 11/30 (37%)
Lrp6NP_001388749.1 YncE 1..204 CDD:442618
LY 89..127 CDD:214531
Ldl_recept_b 150..191 CDD:459654
LY 175..216 CDD:214531
LY 217..251 CDD:214531
FXa_inhibition 286..323 CDD:464251
LY 353..393 CDD:214531
LY 397..437 CDD:214531
Ldl_recept_b 458..499 CDD:459654
LY 483..524 CDD:214531
LY 525..558 CDD:214531
FXa_inhibition 592..627 CDD:464251
YncE <654..813 CDD:442618
LY 697..739 CDD:214531
LY 827..866 CDD:214531
FXa_inhibition 893..929 CDD:464251
LY 958..998 CDD:214531
YncE <968..1075 CDD:442618 14/74 (19%)
LY 1094..1136 CDD:214531 11/52 (21%)
FXa_inhibition 1207..1243 CDD:464251 7/35 (20%)
LDLa 1249..1285 CDD:238060 16/42 (38%)
LDLa 1288..1322 CDD:238060 13/34 (38%)
LDLa 1326..1360 CDD:238060 13/32 (41%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.