DRSC/TRiP Functional Genomics Resources

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Protein Alignment ImpE1 and Vldlr

DIOPT Version :10

Sequence 1:NP_524849.2 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:NP_037287.2 Gene:Vldlr / 25696 RGDID:3963 Length:873 Species:Rattus norvegicus


Alignment Length:394 Identity:100/394 - (25%)
Similarity:131/394 - (33%) Gaps:136/394 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1211 EPEPEEVNTPLPEELPFDLTDHSDVNRFNEL----QSESLILESTTNIDGLQELDNNHIEEEEPA 1271
            :|:.|:.:...||:.      |....|.||:    :|...|.|| ...||..:.||.  |:||..
  Rat    94 DPDCEDGSDESPEQC------HMRTCRINEISCGARSTQCIPES-WRCDGENDCDNG--EDEENC 149

  Fly  1272 AHAIPHEEATPNPADIVEITTQTMLGLASRVTLMEPAAPVVTTLMPLMTADEPTPEPVSPAAIPS 1336
            .:                ||                           .:|||.|           
  Rat   150 GN----------------IT---------------------------CSADEFT----------- 160

  Fly  1337 ASLAAIKPGTELRKRVDLGLEAVSLGLACSSDRQCQLADPHTVCNRRGVCDCAAGEEGSQCSAER 1401
                                        |||.| |  ...:.|||  |..||..|.:...|:...
  Rat   161 ----------------------------CSSGR-C--VSRNFVCN--GQDDCDDGSDELDCAPPT 192

  Fly  1402 TGCSPGTFQCRSSGVCISWFFVCDGRADCNDASD---EECTHNARLNQTCPTESFRCQRSGRCIS 1463
              |....|||.:|. ||...:|||..|||:|.||   |:|.....::..|||...:| .||.||.
  Rat   193 --CGAHEFQCSTSS-CIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQC-GSGECIH 253

  Fly  1464 RAALCDGRRQCPHGEDELGCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGSDEPPHL 1528
            :...|||...|..|.||:.|.     ...|....|.|..|.|:.....||.|..|.|||||    
  Rat   254 KKWRCDGDPDCKDGSDEVNCP-----SRTCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDE---- 309

  Fly  1529 CGSRALPNLFMRLIEAGGLLGGGRREADAYCPHRCSNGLCRSTAIVCSGRDGCGDGTDE--QTCS 1591
                      :........||.|:        .:|.:|.|.....||.....|.|.:||  :.|.
  Rat   310 ----------VNCKNVNQCLGPGK--------FKCRSGECIDITKVCDQEQDCRDWSDEPLKECH 356

  Fly  1592 VCRC 1595
            :..|
  Rat   357 INEC 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_524849.2 EB 75..131 CDD:460294
rne <795..981 CDD:236766
LDLa 1404..1437 CDD:238060 16/35 (46%)
LDLa 1448..1483 CDD:238060 15/34 (44%)
LDLa 1493..1524 CDD:238060 12/30 (40%)
VldlrNP_037287.2 LDLa 33..67 CDD:238060
LDLa 71..103 CDD:197566 2/8 (25%)
Ldl_recept_a 111..149 CDD:395011 14/40 (35%)
Ldl_recept_a 153..188 CDD:395011 17/105 (16%)
LDLa 192..224 CDD:197566 15/34 (44%)
Ldl_recept_a 237..273 CDD:395011 15/36 (42%)
Ldl_recept_a 276..312 CDD:395011 14/49 (29%)
Ldl_recept_a 320..350 CDD:395011 9/37 (24%)
FXa_inhibition 360..394 CDD:464251 1/1 (100%)
EGF_CA 396..426 CDD:214542
LDL-receptor class B 1 439..480
LY 461..499 CDD:214531
LDL-receptor class B 2 481..524
Ldl_recept_b 481..522 CDD:459654
LDL-receptor class B 3 525..567
Ldl_recept_b 527..565 CDD:459654
LDL-receptor class B 4 568..611
Ldl_recept_b 568..608 CDD:459654
LY 592..634 CDD:214531
LDL-receptor class B 5 612..654
LDL-receptor class B 6 655..697
Ldl_recept_b 655..695 CDD:459654
FXa_inhibition 706..749 CDD:464251
Clustered O-linked oligosaccharides 751..790
Endocytosis signal. /evidence=ECO:0000255 832..837
Blue background indicates that the domain is not in the aligned region.

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