DRSC/TRiP Functional Genomics Resources

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Protein Alignment ImpE1 and Ldlrad3

DIOPT Version :9

Sequence 1:NP_001261577.1 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster
Sequence 2:NP_849217.2 Gene:Ldlrad3 / 241576 MGIID:2138856 Length:345 Species:Mus musculus


Alignment Length:134 Identity:46/134 - (34%)
Similarity:63/134 - (47%) Gaps:22/134 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1365 CSSDR------QCQLADPHTVCNRRGVCDCAAGEEGSQCSAERTGCSPGTFQCRSSGVCISWFFV 1423
            ||:.|      ||.           |:.||....:..:|...::.|.|..|.|.|...||...|.
Mouse    37 CSNGRCIPGAWQCD-----------GLPDCFDKSDEKECPKAKSKCGPTFFPCASGIHCIIGRFR 90

  Fly  1424 CDGRADCNDASDEE-CTHNARLNQTCPTESFRCQRSGRCISRAALCDGRRQCPHGEDELGCDGSV 1487
            |:|..||.|.|||| ||.|..|   |.|..:.| |:|.||.::.:|||:..|....||..|:.|:
Mouse    91 CNGFEDCPDGSDEENCTANPLL---CSTARYHC-RNGLCIDKSFICDGQNNCQDNSDEESCESSL 151

  Fly  1488 KGGN 1491
            :.|:
Mouse   152 EPGS 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpE1NP_001261577.1 EB 75..131 CDD:279949
LDLa 1404..1437 CDD:238060 15/32 (47%)
LDLa 1448..1483 CDD:238060 13/34 (38%)
LDLa 1493..1524 CDD:238060
LDLa 1561..1590 CDD:238060
Ldlrad3NP_849217.2 LDLa 32..64 CDD:238060 8/37 (22%)
LDLa 71..106 CDD:238060 17/34 (50%)
LDLa 113..147 CDD:238060 13/34 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 270..345
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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