DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and AT1G21320

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_173554.3 Gene:AT1G21320 / 838729 AraportID:AT1G21320 Length:421 Species:Arabidopsis thaliana


Alignment Length:460 Identity:86/460 - (18%)
Similarity:144/460 - (31%) Gaps:117/460 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 PVPVSVKGHPISHTHQIAHTHQISHSHPISHPH--------HHQ--------------------L 168
            |.|:.|:|          .:|:|....|::.||        |.|                    :
plant    16 PTPLKVRG----------DSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRI 70

  Fly   169 SFAHPTQFAAAVAAHHQQQQQQQAQQQQQAVQQQQQQAVQQQQVAYAVAASPQLQ---QQQQQQQ 230
            ...||..|...|.....|...........:...:.:........::.: .||..:   .::....
plant    71 IHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDTSHGL-ISPAARFAVTEKANIS 134

  Fly   231 HRLAQFNQAAAAALLNQHLQQQHQAQQQQHQAQQQSLAHYGGYQLHRYAPQQQQQHILLSSGSSS 295
            :.|..|  ......::|:....||.|..|::..::...|:.|               :||.|..|
plant   135 NELGTF--VGGEGTMDQYYHHHHQEQPHQNRGFERPSFHHAG---------------ILSPGPYS 182

  Fly   296 SKHNSNNNSNTSAGAASAAVPIATSVAAVPTTGGSLPDSPAHESHSHESNSATASAPTTPSPAGS 360
                          ..|.:....:::.......|:....|:.:.||:.|.......|.:.....|
plant   183 --------------LPSVSPDFFSTIGPTDPQEGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRS 233

  Fly   361 VTSA------------APTATATAAAAGSAAATAAATGTPATS---AVSDSNNNLNSSSSSNSNS 410
            :.||            .|:..|.............:...|..|   .::....:|.|....|...
plant   234 IGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNMMPGPSMGELMAGCGGSLPSDFRPNGRD 298

  Fly   411 NAIMENQMALAPLGLSQSMDSVNTASNE------EEVRTLFVSGLPMDAKPRELYLLFRAYEGYE 469
                        :|..| :|||.....|      :...||:|.|||.:...||:..:||.:.||.
plant   299 ------------MGFGQ-LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYR 350

  Fly   470 GSLLKVTSKNGKTASP--VGFVTFHTRAGAEAAKQDLQGVRFDPDMPQT--IRLEFAKSNTKVSK 530
            ...|.......::..|  :.||.|...|.|..|...||..|.|.|.|.:  :||:|.::      
plant   351 EVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRN------ 409

  Fly   531 PKPQP 535
            |.|:|
plant   410 PGPRP 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 29/85 (34%)
RRM_scw1_like 712..819 CDD:409691
AT1G21320NP_173554.3 VQ 65..88 CDD:461711 4/22 (18%)
RRM_AtNSRA_like 320..408 CDD:410197 29/87 (33%)
Blue background indicates that the domain is not in the aligned region.

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