DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and rbpms2a

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_021326148.1 Gene:rbpms2a / 436682 ZFINID:ZDB-GENE-040718-106 Length:267 Species:Danio rerio


Alignment Length:245 Identity:104/245 - (42%)
Similarity:138/245 - (56%) Gaps:49/245 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   390 TSAVSDSNNNLNSSSSSNSNSNAIMENQMALAPLG------LSQSMDSVNTASNEEEVRTLFVSG 448
            |||:|.....|:|..|:::.::.:.....:.|.:|      ||..: ..::..:..:||||||||
Zfish    14 TSALSLPTVPLSSFLSTSTQTSLMCLRAYSTALIGQRSHCCLSAGV-CCHSGVSLFQVRTLFVSG 77

  Fly   449 LPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFDPDM 513
            ||:|.||||||||||.::||||||:|:|||     .|||||||.:|:||||||..|.|:||||:.
Zfish    78 LPVDIKPRELYLLFRPFKGYEGSLIKLTSK-----QPVGFVTFDSRSGAEAAKNALNGIRFDPES 137

  Fly   514 PQTIRLEFAKSNTKVSKPK--PQPNTATTASHPALMHPLTG-HL---------GGPFFPGGPELW 566
            |||:||||||:|||::|.|  ..||       |:.:||..| |.         |....|..||.|
Zfish   138 PQTLRLEFAKANTKMAKSKLMATPN-------PSNLHPALGAHFIARDPYDLTGAALIPASPEAW 195

  Fly   567 -HHPLAYSAAAAAELPGAAALQHATLVHP-------ALHPQV---PVRSY 605
             .:|| |:......||      ||...:|       |||.||   |:|.|
Zfish   196 APYPL-YTTELTPGLP------HAAFTYPAAAAAAAALHAQVRDPPMRWY 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 58/81 (72%)
RRM_scw1_like 712..819 CDD:409691
rbpms2aXP_021326148.1 RRM_RBPMS2 70..145 CDD:410084 56/79 (71%)
Blue background indicates that the domain is not in the aligned region.

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