DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and Rbpms

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_006509097.1 Gene:Rbpms / 19663 MGIID:1334446 Length:261 Species:Mus musculus


Alignment Length:185 Identity:90/185 - (48%)
Similarity:113/185 - (61%) Gaps:22/185 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   427 QSMDSV---NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGF 488
            |:|.:|   |:..:..:||||||||||:|.||||||||||.::||||||:|:|||     .||||
Mouse    23 QNMLAVTGRNSRVSRCKVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK-----QPVGF 82

  Fly   489 VTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK---------PQPNTAT--TAS 542
            |:|.:|:.|||||..|.|:||||::|||:||||||:|||::|.|         |.|||..  .|.
Mouse    83 VSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAR 147

  Fly   543 HPALMHP-LTGHLGGPFFPGGPELWHHPLAYSAAAAAELPGAAALQHATLVHPAL 596
            .|..:.| |.||..|...|.  .|....|....|||..|.|..|:......|||:
Mouse   148 EPYALDPSLRGHFPGLEVPA--VLLRLCLGCVMAAAICLVGINAVFTGGDCHPAV 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 56/81 (69%)
RRM_scw1_like 712..819 CDD:409691
RbpmsXP_006509097.1 RRM_RBPMS 40..115 CDD:410083 54/79 (68%)
Blue background indicates that the domain is not in the aligned region.

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