DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and cpo

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_061499789.1 Gene:cpo / 11176012 VectorBaseID:AGAMI1_003065 Length:245 Species:Anopheles gambiae


Alignment Length:245 Identity:186/245 - (75%)
Similarity:206/245 - (84%) Gaps:8/245 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   368 ATATAAAAGSAAATAAATGTPATSAVSDSNNNLNSSSSSNSNSNAIMENQMA----LAPLGLSQS 428
            ::...|.:.:..::.:..|....:|.::::..|..:..| :..|..|::.|.    :|||.||||
Mosquito     3 SSPVVAQSNTVVSSPSMNGALNVNAANNNHTGLGQTGQS-ATGNLKMDSSMGQMTPMAPLALSQS 66

  Fly   429 MDSVNTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHT 493
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:|
Mosquito    67 MDSVNTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFNT 131

  Fly   494 RAGAEAAKQDL-QGVRFDPDMPQTIRLEFAKSNTKVSKPKPQPNTATTASHPALMHPLT-GHLGG 556
            ||||||||||| ||||||||||||||||||||||||||||||||||.||:||||||||| ||||.
Mosquito   132 RAGAEAAKQDLQQGVRFDPDMPQTIRLEFAKSNTKVSKPKPQPNTAATAAHPALMHPLTAGHLGT 196

  Fly   557 PFFPGGPELWHHPLAYSAAAAAELPGAAALQHATLVHPALHPQVPVRSYL 606
            |||||||||||||||:| |||||||.||||||||||||||||||||||||
Mosquito   197 PFFPGGPELWHHPLAFS-AAAAELPSAAALQHATLVHPALHPQVPVRSYL 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 80/82 (98%)
RRM_scw1_like 712..819 CDD:409691
cpoXP_061499789.1 None
Blue background indicates that the domain is not in the aligned region.

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