DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bel and Ddx4

DIOPT Version :9

Sequence 1:NP_001262379.1 Gene:bel / 45826 FlyBaseID:FBgn0263231 Length:801 Species:Drosophila melanogaster
Sequence 2:XP_038958110.1 Gene:Ddx4 / 310090 RGDID:1308793 Length:733 Species:Rattus norvegicus


Alignment Length:748 Identity:305/748 - (40%)
Similarity:415/748 - (55%) Gaps:84/748 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 GSADYSGPITSKTSTNSVTGGVYVP-----PHLRGGGGNN-NAADAES-------QGQGQGQGQG 75
            |..|:...|. |...:|     |||     .:..|..|:. |...|.|       .|:......|
  Rat     2 GDEDWEAEIL-KPHVSS-----YVPVFEKDKYSSGANGDTFNRTSASSSEMEDGPSGRDHFMRSG 60

  Fly    76 FDS--RSGN---PRQETRDPQQSRGGGGEYRRGGGGGGRGFNRQSGDYGYGSGGGGRRGGGGRFE 135
            |.|  ..||   .....|:...:.||.|   ||.|.|.|||  .:..:..|...|..:......|
  Rat    61 FSSGRNLGNRDIGESSKRETTSTTGGFG---RGKGFGNRGF--LNNKFEEGDSSGFWKESTNDCE 120

  Fly   136 DNYNGGEFDSRRGG--DWNRSGGGGGGGRGFGRGPSYRGGGGGSGSNLNEQTAEDGQAQQQQQPR 198
            |........|:|||  |.|.|...|...|| ||| |:||..||.|  |....:|..|.|..|  |
  Rat   121 DTQTRSRGFSKRGGYPDGNDSEASGPFRRG-GRG-SFRGCRGGFG--LGRPNSEYDQDQGSQ--R 179

  Fly   199 NDRWQEPERPAGFDG------------SEGGQSAGGNRSYNNRGERGGGGYNSRWK---EGG--- 245
            ........:||..|.            |..|...||.:..|.....|.|  .:.||   |||   
  Rat   180 GGGLFGSRKPAASDSVQCFTGSGDTFQSRSGNGRGGYKGLNEEVVTGSG--KNSWKSEAEGGESS 242

  Fly   246 ---GSNVDYTKLGARDERLEVELFGVGNTGINFDKYEDIPVEATGQNVPPNITSFDDVQLTEIIR 307
               |..|.|......::  |..:|....||||||||:.|.||.:|.:.||.|.:|::..|.:.:.
  Rat   243 DIQGPKVTYIPPPPPED--EDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLN 305

  Fly   308 NNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQY 372
            ||:|.|.|.|.|||||::|||::.|||||||||||||||||||:|||..|...|      .|...
  Rat   306 NNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDG------ITASR 364

  Fly   373 SRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPG 437
            .:..|.|..:::||||||..||:.||:||::.:.:|..|:|||......:|::.:||:::.||||
  Rat   365 FKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPG 429

  Fly   438 RLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQ 502
            ||.|:|.:.|:||:.:::||||||||||||||.|::::::....||...|||||:||||||::||
  Rat   430 RLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQ 494

  Fly   503 ELASDFL-SNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFV 566
            .||.:|| |||:|:|||:||....::.|:||.|.:..||..|:::|.:|       .|..|::||
  Rat   495 RLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKREKLVEILRNI-------GDERTMVFV 552

  Fly   567 ETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHV 631
            ||||.||.:..||.|.....|||||||.|:|||:||..||.|.||:||||:||||||||.:|:||
  Rat   553 ETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHV 617

  Fly   632 INFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN-EKNRNICSDLLELLIETKQEIPSFMEDMS-S 694
            |||||||.::|||||||||||.||.|.|.|||: |.:.::...|:::|.:.:|::|:::|::: |
  Rat   618 INFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFS 682

  Fly   695 DRGHGGAKRAGRGGGGRYGGGFGSRDYRQSSGG 727
            .........:.|      |..|.|.|.|::..|
  Rat   683 SYAPPSFSNSTR------GAVFASVDTRKNFQG 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
belNP_001262379.1 DEADc 297..516 CDD:238167 112/219 (51%)
DEXDc 315..529 CDD:214692 111/214 (52%)
Helicase_C 538..654 CDD:278689 69/115 (60%)
Ddx4XP_038958110.1 DEADc_DDX4 262..514 CDD:350810 131/257 (51%)
SF2_C_DEAD 520..649 CDD:350174 78/135 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0335
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253442at33208
OrthoFinder 1 1.000 - - FOG0000634
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100461
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.720

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