DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bel and Ddx42

DIOPT Version :10

Sequence 1:NP_001262379.1 Gene:bel / 45826 FlyBaseID:FBgn0263231 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_001100529.1 Gene:Ddx42 / 303607 RGDID:1304909 Length:929 Species:Rattus norvegicus


Alignment Length:877 Identity:236/877 - (26%)
Similarity:359/877 - (40%) Gaps:207/877 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 GQGQGQGQGFD--SRSGNPRQETRDPQQSRGGGGEYRRGGGGGGRGFNRQSGDYGYGSGGGGRRG 129
            |.|..:|.||.  :.|...::|.:.||||....|......|.|.....:....|..||.......
  Rat     7 GPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFYKIGSKRANFDE 71

  Fly   130 GGGRFEDN----------YNGGEFDSRRGGDWNRSGGGGGGGRGFGRGPSYRGGGGGSGSN---- 180
            ....|||.          |...|....|                    ..:|.....|.|:    
  Rat    72 ENAYFEDEEEDSSNVDLPYIPAENSPTR--------------------QQFRSKPADSDSDDDPL 116

  Fly   181 ------LNEQTAEDGQAQQQQQP--------RNDRWQEPERPAGFDGSEGGQSAGGNRSYNNRGE 231
                  :.:|.|.|.:..:::..        |:|..:|.::.|.|.......:||          
  Rat   117 EAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAG---------- 171

  Fly   232 RGGGGYNSRWKEGGGSNVDYTKLG---ARDERLEVELFGVGNTGINFDKYE-------------- 279
                    ..:|....|::|...|   |..:::...|..:.::.|::..:|              
  Rat   172 --------VVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLT 228

  Fly   280 ---------DIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDL 335
                     .:.:..:|...|...:||......|.:.:.:..:.|.:|||:|...:|:.::|||:
  Rat   229 PQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDM 293

  Fly   336 MACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKK 400
            :..|:|||||||||:.|:|..:.:...:.|...          |:.:::.|||||..||..|.|:
  Rat   294 IGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDG----------PIAVIVCPTRELCQQIHAECKR 348

  Fly   401 FAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRML 465
            |.....:|...:|||.:..||.:.|..|..::|.|||||.|.:.:....|:.:.:||.||||||.
  Rat   349 FGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMF 413

  Fly   466 DMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT 530
            |||||.|:|.|...:.    ..||||:|||||.|:|::||.|.|.:.|.:..|.:|..:|::||.
  Rat   414 DMGFEYQVRSIASHVR----PDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQI 474

  Fly   531 ILWVYE-PDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRT 594
            :..::. |.|.::|...|      .|:|.....|:||..|..|:.|...|.|..|.:..:|||..
  Rat   475 VEILHSGPSKWNWLTRRL------VEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMD 533

  Fly   595 QKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVA 659
            |.||.:.:..|:..|.|:||||.|||||||||.:|.|||:|:..|::.:.||||||||.|..|||
  Rat   534 QSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVA 598

  Fly   660 TSFFNEKNRNICSDLLELLIETKQEIPSFMEDMS-------SDRGHGG-AKRAGRGGGG---RYG 713
            .:....|:.|...||:..|....|.:...:.|::       ..|..|| .|:...||||   |..
  Rat   599 YTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRER 663

  Fly   714 GGFGSRD---------------YRQSSGGGGG------------------GRSGPPPRSGGSGSG 745
            .|.||.:               |:.|:|..|.                  ..|....::|.|.:|
  Rat   664 PGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQKAGTSTAG 728

  Fly   746 GGG----GS-----------------------------YRSNGN------SYGKFG----GNSGG 767
            ..|    ||                             :.::||      :|...|    .|:..
  Rat   729 ASGWTSAGSLNSVPTNSAQQGHNSPDNPITSSTKNIPGFNNSGNISSAPVTYPSIGAQGVNNTAS 793

  Fly   768 GGYYGGGAGGGS-----YGGSYGGGSASHSSN 794
            |.....|.|||:     |..:.|||..||..:
  Rat   794 GSNSREGIGGGNGKRERYTENRGGGRHSHGDS 825

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
belNP_001262379.1 DEADc_DDX3 275..522 CDD:350809 88/269 (33%)
SF2_C_DEAD 527..663 CDD:350174 57/136 (42%)
Ddx42NP_001100529.1 SrmB 254..677 CDD:440279 163/442 (37%)
dermokine <644..>889 CDD:455732 38/182 (21%)

Return to query results.
Submit another query.