DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abl and LSB1

DIOPT Version :10

Sequence 1:NP_001261962.1 Gene:Abl / 45821 FlyBaseID:FBgn0000017 Length:1723 Species:Drosophila melanogaster
Sequence 2:NP_011652.1 Gene:LSB1 / 853037 SGDID:S000003368 Length:241 Species:Saccharomyces cerevisiae


Alignment Length:180 Identity:43/180 - (23%)
Similarity:71/180 - (39%) Gaps:40/180 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 RWTSKENLLAPGPEEDDPQLFV-ALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNV 253
            :|...:.    .|:..|.:.:| |||||:|..:..||||.|:::::|. ..|.:|....|:: .:
Yeast    41 KWDGNQR----SPQNADTEEYVEALYDFEAQQDGDLSLKTGDKIQVLE-KISPDWYRGKSNN-KI 99

  Fly   254 GWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYH 318
            |..|:|||.|.        :....|..:||...||.::     |.|...|               
Yeast   100 GIFPANYVKPA--------FTRSASPKSAEAASSSTVS-----RPSVPPP--------------- 136

  Fly   319 YRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQN 368
               |.:|....:.:|:..........:..:.|.:...  .||.||.|..|
Yeast   137 ---SYEPAASQYPSQQVSAPYAPPAGYMQAPPPQQQQ--APLPYPPPFTN 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AblNP_001261962.1 SH3_Abl 209..263 CDD:212784 21/54 (39%)
SH2_ABL 268..363 CDD:198189 14/94 (15%)
PTKc_Abl 382..644 CDD:270645
FABD 1584..1723 CDD:197885
LSB1NP_011652.1 SH3 55..108 CDD:214620 20/54 (37%)
PRK12323 <100..>156 CDD:481241 17/86 (20%)
Blue background indicates that the domain is not in the aligned region.

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