DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abl and ret

DIOPT Version :10

Sequence 1:NP_001261962.1 Gene:Abl / 45821 FlyBaseID:FBgn0000017 Length:1723 Species:Drosophila melanogaster
Sequence 2:XP_012822323.2 Gene:ret / 100495902 XenbaseID:XB-GENE-485176 Length:1102 Species:Xenopus tropicalis


Alignment Length:481 Identity:146/481 - (30%)
Similarity:231/481 - (48%) Gaps:63/481 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 GPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNT 339
            ||:..:..:.:::.|:..||::....||         |....||....:.|    ..:.|..|..
 Frog   615 GPLCDDTCKTVIACGVFLSFIISVLLSS---------YFIHRYHKNSPKPP----IASAEMTFRR 666

  Fly   340 LAELVHHHSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVY 404
            .|:   .:.|.:..:....|.|.....|.....|.: ||..:||..|.::::...||.|::|:|.
 Frog   667 PAQ---SYPVSYSSNNARRPSLDSMENQVSVDTFKI-PEDPKWEFPRKNLVLGKTLGEGEFGKVV 727

  Fly   405 EAV-----WKRYGNTVAVKTLKEDT--MALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIIT 462
            :|.     .|....|||||.|||..  ..|:|.|.|..::|::.||::::|.|.||::.|.::|.
 Frog   728 KATAFRLKGKAGYTTVAVKMLKESASQSELRDLLSEFNLLKQVNHPHVIKLYGACTQDGPLHLIV 792

  Fly   463 EFMSHGNLLDFLRSAGR----------------------ETLDAVALLYMATQIASGMSYLESRN 505
            |:..:|:|..|||.:.:                      ..|....|:..|.||:.||.||....
 Frog   793 EYAKYGSLRSFLRESRKVGPSSLGGDSNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK 857

  Fly   506 YIHRDLAARNCLVGDNKLVKVADFGLAR-LMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSDV 569
            .:||||||||.||.:.:.:|::||||:| :..:|:|...:..:.|:||.|.|.|..:.::|:|||
 Frog   858 LVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDV 922

  Fly   570 WAFGVLLWEIATYGMSPYPAIDLTDVYHKLDKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFK 634
            |:||||||||.|.|.:|||.|....:::.|..|||||:|..|..|:|:||.:||:.:...||||.
 Frog   923 WSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMEKPENCSDEMYNLMLKCWKQEPDKRPTFG 987

  Fly   635 SIHHALEHMFQESSITEAVEKQLNANATSASSSAPSTSGVATGGGATTTTAASGCASSSSATASL 699
            .|...||.|..:|           .:....::|.|:.|.:...|.:...|....|   ::|....
 Frog   988 EISKELEKMMVKS-----------RDYLDLAASTPADSLLYDDGLSEEETPLVDC---NNAPLPR 1038

  Fly   700 SLTPQMVKKGLPGGQALTPNAHHNDP 725
            :|....::..|.|  ...||.....|
 Frog  1039 TLPSTWIENKLYG--MSYPNWSEESP 1062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AblNP_001261962.1 SH3_Abl 209..263 CDD:212784
SH2_ABL 268..363 CDD:198189 17/87 (20%)
PTKc_Abl 382..644 CDD:270645 110/291 (38%)
FABD 1584..1723 CDD:197885
retXP_012822323.2 RET_CLD1 20..140 CDD:465485
CA_like 160..242 CDD:481204
RET_CLD3 252..368 CDD:465516
RET_CLD4 392..494 CDD:465517
PTKc_RET 711..1000 CDD:173631 108/288 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.