DRSC/TRiP Functional Genomics Resources

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Protein Alignment onecut and cux2b

DIOPT Version :9

Sequence 1:NP_001259065.1 Gene:onecut / 45816 FlyBaseID:FBgn0028996 Length:1081 Species:Drosophila melanogaster
Sequence 2:XP_009302008.1 Gene:cux2b / 565530 ZFINID:ZDB-GENE-081104-176 Length:1456 Species:Danio rerio


Alignment Length:1261 Identity:236/1261 - (18%)
Similarity:425/1261 - (33%) Gaps:404/1261 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FSQELVEDASEFITVGHHSERPSQSSQQPNSGQDLTMSMQDIISCPVKHRTCSASGSGSASGSDS 77
            :.||..|...|...:..:.|:   ::|:.::.|.....:::           ..||:.|.|    
Zfish   234 YDQEKAEKLEEMCALMANLEK---ANQRADAAQREVEKLRE-----------QLSGTQSTS---- 280

  Fly    78 VVMVIDALGQGNRQSAYQIVPQQLQQRNMPLPFGLLERDRQHMQHGREVNTSPVDFVSSDINLDG 142
                   .|.|..:..    |::..:|:..|...|..:||:.::  ...|...:.|...::.   
Zfish   281 -------KGTGPSEER----PKEESERDERLEALLFSKDREILR--LLENVQRLQFTLQEVQ--- 329

  Fly   143 LTVDADVSQTDHSQETAVKQEQKLLIVQSKSQDQSHRRIRMLVDVSSVNSGLGVHVDDMDEISSD 207
               |:..:|....:.....:.:.:..:::|.|.|        :|...:.:.|.: :..|...|::
Zfish   330 ---DSSANQIAELERQLAYKSEAIETLETKLQSQ--------IDYEEIKTELSI-LKAMKLASAN 382

  Fly   208 GVG------------CDDEGVTLSHQHLLEQEEQF------------------------------ 230
            |..            .|.|....||:.|:::.:..                              
Zfish   383 GSSSQESAKTAEALLLDKEAFLPSHKFLVDKVKVLHNSDDGHSEKSNDVSRPAGSYSSPPGTLPI 447

  Fly   231 -GLTSHHP---------HLQP------------------HTQIIHGLHQRSTHSEMG-------- 259
             |.||..|         |..|                  ..|::..|.::...|.|.        
Zfish   448 DGRTSSSPAPPTSDTSTHTLPRPFSVSPFSGEKLQDQLLQKQLLSPLFKKDGSSIMAFPTALYAA 512

  Fly   260 ----LDNGHGEVLSVIVHS-QDSDKEDCEENDDGDAEGDLENEDDDERDS-----RSREQLLSHS 314
                |...|...:.:.:.: ..||     :::.|.:.|.    |||:.|:     :.:||||.|:
Zfish   513 KAALLSANHSASIPITMETGMPSD-----QSESGSSGGG----DDDQLDTAEIAFQVKEQLLKHN 568

  Fly   315 SYQTL----------TSVNDRLSSPGFSQTSYATLTPIQPLPPISTMS----------------- 352
            ..|.:          .||::.|:.|    ..:..|| ::...|...|.                 
Zfish   569 IGQRVFGHYVLGLSQGSVSEILARP----KPWRKLT-VKGKEPFIKMKQFLSDEQNILALRTIQV 628

  Fly   353 -EKFAYSGHISGGDSGDTDVNGDGAGGGVVEVG--EVTNQSSEATGTVSISSGNATSSVCSNND- 413
             ::.:.:..|...::|     .|.|...::|..  |:.:|..:...::...||.:::...|::| 
Zfish   629 RQRGSITPRIRTPETG-----SDDAIKSILEQAKKEIQSQRGDCKSSLGCPSGRSSTGAGSSSDE 688

  Fly   414 -------------------------CSSFSA---LSM------------PIGSGHLGLGVLSGVQ 438
                                     |...||   ||:            |......|:.|...:.
Zfish   689 AIKSILEQARREMQAQQQALLEMEVCGRSSASERLSIHDPPKSQASSTPPFIKQEEGISVPQSLS 753

  Fly   439 SPFSSYEKLSSMISPPPNNYLVSCDLHSSVSGRVINSSHLQLSHNGNKKESGTHEHTH----RPA 499
            :|..|.:...|::||            ::....:|.....::.      |:||:...|    |.|
Zfish   754 NPTGSPQTPLSVLSP------------AAFVQNIIRKVKSEIG------EAGTYFDQHWSVERSA 800

  Fly   500 DVNGGKFSYTGHISRGDSVDNDVNGEKFSFSDHISGGDSGDEDANREKFIYSDHISEGENGPDVN 564
            .|.|...|.:..:|...|........:.         ::||..|               ||.|.:
Zfish   801 AVMGPFTSVSPSLSSSSSTSMPRPWPRI---------ENGDCPA---------------NGEDTS 841

  Fly   565 SGTNWLQMHSEREVRLHMPVPAELEARFHISSERRT---RLNVPPARGSLSRHLAPNA-PICPAD 625
            :        .|.|..|...|..::|....:|||...   |::..|.  .:.|.|.|.. |:.|..
Zfish   842 A--------PEDEPMLSRQVEIKVEPDASVSSEASCGGGRVSFYPT--YIPRTLKPTVPPLTPEQ 896

  Fly   626 WKADDWKHSNAGVVSLTADMPVVVSLTPTPPPLRDDSVSGIKQNERS-----------------S 673
            ::.  :.:.....:.||..:...::.......:..:.|.|:.|...|                 .
Zfish   897 YEM--YMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGRE 959

  Fly   674 PGHREQYFL--------------DKSQEPSSVVADQCSPGINGTP---QSVCVIHQQSPSALGNG 721
            |..|.|.:|              :.|||.|.|.: :.||....:|   ||..|:   .|.:|...
Zfish   960 PFIRMQLWLLDQLGHGLNQLPNHNHSQEKSPVTS-RSSPSPPASPADAQSSTVL---EPVSLALE 1020

  Fly   722 FQSSSQQAKVSSCASPKGTVSS-----------GGAVSNRIANSSDMEEINTKDLAQRISAELKR 775
            ....:||.:......|.|..||           |  :...:|.|   .|::|..:.:|:...|..
Zfish  1021 SSKENQQPQPPQPLEPHGVKSSVMIPQQTHTPLG--IQELVAMS---PELDTYAITKRVKEVLTD 1080

  Fly   776 YSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRETFRRMYKWLQEPEFQRMSALRMAAAQ 839
            .::.|.:|.:.:|..:||::||||..||||.||. .|||.|.||..||.:|  ..:..|| ...:
Zfish  1081 NNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDP--HNVDKLR-DVKK 1142

  Fly   840 IPQRAPLSSGMSLGSATGPSGSTGTIPTDLDPHGGPTMIQNPLTNESDSSPASTPVTSVLVGSVV 904
            :.::|.|.....|                |.|           .::|||..|.:...|..:.::.
Zfish  1143 MEKKAYLKRRYGL----------------LSP-----------GSDSDSPGAHSDCISPGLSALD 1180

  Fly   905 SCRRKEEPQIEQMPQPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGLEPTTVGNFFM 969
            .|         ...|.||||:|....::..|:..:.:...||:.....:|.||.|:..||.|:|.
Zfish  1181 LC---------PFSQAKKPRVVLAAEEKEALRKAYLQEPYPSQHTIEMLAAQLNLKTNTVINWFH 1236

  Fly   970 NARRRS-----MDKWRDDDSKSTMHVAHSRQQQDEQQKDNAHTHSQSQIQD-QNHSQNQAIHN-S 1027
            |.|.|.     |:..:|:|:             |.:..:.:...|.|.:.| ::..|..::.| |
Zfish  1237 NYRSRMRREVLMEGLQDNDT-------------DAEHNNYSPLASHSPVSDREDRKQPPSVRNRS 1288

  Fly  1028 MSQDPYSNLHTTAMSPLGAFDEDADM 1053
            :|..|    |..|:.......||.::
Zfish  1289 VSTIP----HRFAVKQETTEPEDEEL 1310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
onecutNP_001259065.1 CUT 756..830 CDD:280527 28/74 (38%)
HOX 920..975 CDD:197696 18/54 (33%)
cux2bXP_009302008.1 CENP-Q 206..358 CDD:289839 24/160 (15%)
CUT 551..620 CDD:280527 15/73 (21%)
CUT 901..968 CDD:280527 9/66 (14%)
CUT 1061..1137 CDD:280527 29/80 (36%)
Homeobox 1190..1243 CDD:278475 17/52 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2252
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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