DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment onecut and Onecut1

DIOPT Version :9

Sequence 1:NP_001259065.1 Gene:onecut / 45816 FlyBaseID:FBgn0028996 Length:1081 Species:Drosophila melanogaster
Sequence 2:XP_006243466.1 Gene:Onecut1 / 25231 RGDID:2811 Length:491 Species:Rattus norvegicus


Alignment Length:808 Identity:237/808 - (29%)
Similarity:309/808 - (38%) Gaps:356/808 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 EISSDGVGCDDEGVTLSHQHLLEQEEQFGLTSH------H--PHLQPHTQIIHGLHQRSTHSEMG 259
            :::.:.:| :..||  ||:.:....:..|.:.|      |  .||.|       .|.||......
  Rat     4 QLTMEAIG-ELHGV--SHEPVPAPADLLGGSPHARSSVGHRGSHLPP-------AHPRSMGMASL 58

  Fly   260 LDNGHGEVLSVIVHSQDSDKEDCEENDDGDAEGDLENEDDDERDSRSREQLLSHSSYQTLTSVND 324
            ||.|.|                               ..|.....|:.|..|:...:.|:|...:
  Rat    59 LDGGSG-------------------------------GSDYHHHHRAPEHSLAGPLHPTMTMACE 92

  Fly   325 RLSSPGFSQ-TSYATLTPIQPLPPISTMSEKFAYSGH-------------ISGGDSGDTDVNGDG 375
              :.||.|. |:|.||||:||||||||:|:||.:..|             ::|..||...:..|.
  Rat    93 --TPPGMSMPTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNVSGSFTLMRDE 155

  Fly   376 AGGGVVEVGEVTNQSSEATGTVSISSGNATSSVCSNNDCSSFSALSMPIGSGHLGLGVLSGVQSP 440
            .|                                    .:|.:.|..|......|:|     || 
  Rat   156 RG------------------------------------LASMNNLYTPYHKDVAGMG-----QS- 178

  Fly   441 FSSYEKLSSMISPPPNNYLVSCDLHSSVSGRVINSSHLQLSHNGNKKESGTHEHTHRPADVNGGK 505
                      :||...:.|.|  :|:|..|         |.|..:   .|....|.:....||.:
  Rat   179 ----------LSPLSGSGLGS--IHNSQQG---------LPHYAH---PGAAMPTDKMLTPNGFE 219

  Fly   506 FSYTGHISRGDSVDNDVNGEKFSFSDHISGGDSGDEDANREKFIYSDHISEGENGPDVNSGTNWL 570
            ..:...:.|                                                        
  Rat   220 AHHPAMLGR-------------------------------------------------------- 228

  Fly   571 QMHSEREVRLHMPVPAELEARFHISSERRTRLNVPPARGSLSRHLAPNAPICPADWKADDWKHSN 635
              |.|                                     :||.|                ::
  Rat   229 --HGE-------------------------------------QHLTP----------------TS 238

  Fly   636 AGVVSLTADMPVVVSLTPTPPPLRDDSVSGIKQNERSSPGHREQYFLDKSQEPSSVVADQCSPGI 700
            ||:|.:.       .|.|..|           ....::.||.:  .|..::||            
  Rat   239 AGMVPIN-------GLPPHHP-----------HAHLNAQGHGQ--LLGTAREP------------ 271

  Fly   701 NGTPQSVCVIHQQSPSALGNGFQSSSQQAKVSSCASPKGTVSSGGAVSNRIANSSDMEEINTKDL 765
                         :||..|                   ..||:|       :||..|||||||::
  Rat   272 -------------NPSVTG-------------------AQVSNG-------SNSGQMEEINTKEV 297

  Fly   766 AQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMYKWLQEPEFQRM 830
            ||||:.|||||||||||||||||||||||||||||||||||||||||||||||:|||||||||||
  Rat   298 AQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRM 362

  Fly   831 SALRMAAAQIPQRAPLSSGMSLGSATGPSGSTGTIPTDLDPHGGPTMIQNPLTNESDSSPASTPV 895
            ||||:|.                ||.|     |::|:.....|||.:...||       ||    
  Rat   363 SALRLAE----------------SAMG-----GSVPSLRITSGGPQLSVPPL-------PA---- 395

  Fly   896 TSVLVGSVVSCRRKE-EPQIEQMPQPKKPRLVFTDLQRRTLQAIFKETKRPSKEMQVTIARQLGL 959
                      |:||| |...::...||||||||||:|||||.|||||.||||||:|:||::||||
  Rat   396 ----------CKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGL 450

  Fly   960 EPTTVGNFFMNARRRSMDKWRDDDSKST 987
            |.:||.||||||||||:|||:|:.|.::
  Rat   451 ELSTVSNFFMNARRRSLDKWQDEGSSNS 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
onecutNP_001259065.1 CUT 756..830 CDD:280527 67/73 (92%)
HOX 920..975 CDD:197696 44/54 (81%)
Onecut1XP_006243466.1 CUT 290..362 CDD:396794 66/71 (93%)
HOX 411..466 CDD:197696 44/54 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338637
Domainoid 1 1.000 148 1.000 Domainoid score I4338
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001166
OrthoInspector 1 1.000 - - otm46086
orthoMCL 1 0.900 - - OOG6_110183
Panther 1 1.100 - - O PTHR14057
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X793
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.840

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